Topics tagged fasta

Topic	Replies	Views	Activity
[faidx] Could not build fai index reference.fa.fai fasta	1	203	August 7, 2023
Custom genome + custom build: How to use a genome that is not natively indexed at the server you are working at usegalaxy.eu support fasta-manipulation , fasta , custom-genome , reference-genome , custom-build	3	276	May 21, 2023
Minimap2 fails immediately on mapping fasta to hg38 upload , fasta , mapping , qa-qc , fastqsanger	2	192	May 15, 2023
Continuing the discussion from [RSEM prepare reference tool does not produce valid reference files] usegalaxy.eu support rna-seq , fasta , input , troubleshooting , gtf	1	441	May 4, 2023
Selective elimination of Sequences using tools usegalaxy.org support fasta	3	150	April 26, 2023
mirdeep2 errors -- Solution: verify input format usegalaxy.org support fasta , custom-genome , troubleshooting , reference-genome	1	255	April 13, 2023
Error in train augustus tool fasta , assembly , gff3	1	262	April 10, 2023
Genome build for dog in RNA STAR usegalaxy.eu support fasta , index , custom-genome , reference-genome , custom-build	5	210	March 20, 2023
Reference sequence NCBI ID number usegalaxy.org.au support fasta , custom-genome	1	197	March 7, 2023
NCBI accession download tool error -- How to get custom genome and annotation into Galaxy usegalaxy.org support fasta , custom-genome , reference-annotation , gtf , reference-genome	1	283	February 10, 2023
Adding new Reference genomes to the DeepVariant deep learning-based variant caller usegalaxy.eu support fasta , custom-genome , reference-annotation , reference-genome , custom-build	1	316	January 26, 2023
Salmon output issue: differences in line numbers of Quantification and Gene Quantification output files usegalaxy.org support fasta , deseq2 , transcriptomics , gtf	6	439	January 11, 2023
Reference genome for RNAseq analysis rna-seq , fasta , custom-genome , hisat2 , gtf	1	294	November 17, 2022
how to do RNA STAR with Borrelia burgdorferi data usegalaxy.eu support fasta , custom-genome , reference-annotation , gtf , reference-genome	1	184	November 7, 2022
fasta file begins with carat (>) and not @ usegalaxy.org support fasta , fastqsanger , datatype	3	424	November 4, 2022
How can I add a new reference genome to the list? usegalaxy.org support fasta , custom-genome , custom-build	1	226	August 25, 2022
Convert fastqsanger.gz to fasta text-manipulation , fasta , fastqsangergz	2	1014	June 15, 2022
Failed to proceed with featureCounts rna-seq , fasta , reference-annotation , gtf , reference-genome	5	327	April 22, 2022
OrthoMCL workflow BLAST Database error: No alias or index file found for protein database usegalaxy.org support fasta , blast	1	369	March 25, 2022
Makeblastdb: Job output not returned from cluster error usegalaxy.eu support fasta , makeblastdb	3	440	February 3, 2022
query sequence to new custom genomic scaffold usegalaxy.org support fasta , assembly , igv	4	394	February 10, 2023
Reference genome not in database offered by galaxy - Solution: Use a custom genome usegalaxy.org support fasta , custom-genome , ftp-upload , custom-build	9	739	January 14, 2023
job paused and data not working? fasta , qa-qc , rna-star , fastqsanger , paused-jobs	1	438	September 20, 2021
How to convert raw sequence to FASTA format with awk usegalaxy.eu support fasta	0	513	August 17, 2021
Reference geneome usegalaxy.org support fasta , custom-genome , custom-build	1	353	August 10, 2021
Failed BLAST+ jobs: Tips and formatting help for successful index creation with makeblastdb usegalaxy.org support fasta-manipulation , fasta , custom-genome , blast , makeblastdb	4	624	April 21, 2021
uploading fa.gz file upload , fasta , ftp-upload , upload-by-url , datatype	1	564	November 19, 2020
How to retrieve reads from fasta file based on a list of identifier? name fasta-manipulation , text-manipulation , fasta	4	754	November 4, 2020
How to Normalize Fasta File fasta-manipulation , fasta , format , troubleshooting	1	627	October 26, 2020
Pacbio fasta and fastq files fasta , pacbio	0	371	September 7, 2020