Topics tagged fastq

Topic	Replies	Views	Activity
NCBI SRA Fastq (convert SRA files from GEO into fastq files) usegalaxy.org support metadata , fastq , sra	6	41	June 14, 2021
renaming reads with barcode using cutadapt text-manipulation , fastq , qa-qc	8	73	June 4, 2021
hisat2 low overall aligment rate fastq , mapping , qa-qc , hisat2 , fastqsanger	2	38	May 27, 2021
Installing fastx_barcode_splitter_enhanced -- multiplexed reads, barcodes, tools fastq	6	115	May 25, 2021
Trimmomatic error; encountered a tool detected error fastq , qa-qc , trimmomatic , fastqsanger , datatypes	6	88	May 4, 2021
Fastqsanger to fastq fastq , fastqsanger , datatype	3	85	April 25, 2021
Fastq Manipulation: Trimming user-specified regions usegalaxy.eu support fastq , qa-qc	3	216	April 21, 2021
Batch concatenate reads fastq , galaxy-local	4	89	April 21, 2021
Filtering reads based on a sequence usegalaxy.org support fastq , filter	2	75	April 7, 2021
how to configure fastq_dump on a local galaxy build on aws ec2? fastq , sra , galaxy-local	0	109	March 5, 2021
fastqsanger.gz file not recognized in usegalaxy.org usegalaxy.org support dataset-collection , fastq , ncbi , mapping , fastqsangergz	11	767	February 25, 2021
Get selected reads from SRA data sets usegalaxy.org support fastq , sra , filter	0	100	December 1, 2020
Keep getting an error when trying to use CANU assembler with Oxford Nanopore reads dataset-collection , fastq , assembly , fastqgz , datatype	7	289	July 20, 2020
Problem processing Paired end collections with MiniMap2 dataset-collection , fastq , error , mapping , collections	11	467	July 2, 2020
How to change fastq header? usegalaxy.eu support text-manipulation , fastq	4	532	June 3, 2020
Collapse Sequences Failure usegalaxy.org support admin , fasta , fastq , troubleshooting , error	0	172	February 24, 2020
fasta to fastq; fastsanger.gz to fastq; SRA to fastq fastq , ncbi , sra , fastqsangergz , fastqsanger	3	1092	February 11, 2020
Difficulty in getting SRA into Galalxy usegalaxy.org support bam , fastq , ncbi , fastqsangergz , fastqsanger	6	883	December 18, 2019
Trinity seems to be hanging fastq , trinity , fastqsangergz , server-side-delay , fastqsanger	6	269	December 13, 2019
Trim Galore error due to problematic fastq format usegalaxy.eu support fastq , format , fastq-format-error	7	1993	November 26, 2019
Question about tool errors in an older Galaxy release admin , jobs , fastqc , dataset , fastq	3	454	October 26, 2019
Uploading and processing data created by other programs workflow , fasta , fastq , galaxy-local	1	175	October 16, 2019
bowtie2 fatal error message usegalaxy.org support dataset , fastq , bowtie2 , fastq-format-error	4	409	September 12, 2019
Should or can paired-end fastq be converted to single-end fastq -- and the reverse? usegalaxy.org support fastq , fastq-format-error	5	428	July 3, 2019
Convert from BAM to fastq usegalaxy.org support fastq , input , fastqsanger	18	939	May 29, 2019
How to extract unique reads from SAM file usegalaxy.org support bam , fastq , sam	1	613	May 29, 2019
'Bam to fastq' programs on Windows ? usegalaxy.org support bam , fastq	2	239	May 21, 2019
Paird-end Fastq-dump Manipulation - Fastq De-Interlacer rna-seq , fastq	3	1215	May 7, 2019
problem in assembly of pacbio sequences fasta , fastq , input	1	365	May 6, 2019
HELP for ddRAD de novo map analysis usegalaxy.eu support tutorial , fastq , galaxy-local , stacks , stacks2	0	233	May 2, 2019