Topics tagged fastqc

Topic	Replies	Views	Activity
FastQC analysis of ChIPseq sample usegalaxy.org support qa-qc , chip-seq , fastqc	1	47	April 27, 2023
BLAST: unidentified overrepresented sequences broadly match whole genome sequencing contigs usegalaxy.org support fastqc , blast	3	138	January 12, 2023
choosing the right QC option usegalaxy.org support fastqc , cutadapt , filter	1	133	November 23, 2022
FastQC Overrepresented sequences percentage fastqc	2	172	October 27, 2022
Paired-End RNA Seq Trimming fastqc , transcriptomics , qa-qc , dataset-collection , rna-seq	4	178	October 26, 2022
Server issue at UseGalaxy.org September 2, 2022 -- Status = RESOLVED usegalaxy.org support server-side-error , fastqc	3	193	January 30, 2023
regd fastqc ouput usegalaxy.eu support qa-qc , fastqc	1	191	August 26, 2022
regarding MULTIQC not working usegalaxy.eu support multiqc , collections , dataset-collection , fastqc	4	263	July 26, 2022
Trouble downloading and unzipping data usegalaxy.org support download , server-open-issue , wget , curl , fastqc	3	341	July 22, 2022
fastqc read quality reports fastqc , queued-gray-datasets , jobs	1	196	June 30, 2022
MultiQC does not recognize raw data (txt) from FastQC when in a collection multiqc , dataset-collection , fastqc	2	222	May 2, 2022
MultiQC not working correctly multiqc , tool-error , dataset-collection , fastqc	6	946	March 11, 2022
too much time for start a job? Troubleshooting Trinity inputs + QA/QC steps for RNA-seq assembly usegalaxy.org support trinity , fastqc , qa-qc , trimmomatic , fastq-deinterlacer	5	971	June 7, 2021
de novo assembly using Trinity in Galaxy fastqsanger , fastqc , assembly , trinity , trimmomatic	7	3875	February 25, 2020
FastQC reports from list of pairs PE Illumina reads all have sample name "forward" or "reverse" multiqc , galaxy-local , fastqc	5	321	May 28, 2021
what tools approprite for remove duplicate reads from BAM file in Usegalaxy fastqc , rna-seq , bam , usegalaxy	3	1003	April 19, 2021
RNA seq HiSAT2 pipeline - slurmstepd: error: Detected 1 oom-kill usegalaxy.org support qa-qc , fastq-format-error , trimmomatic , fastqc , multiqc	3	627	November 9, 2020
FASTQC GC content fail: rRNA detection usegalaxy.org support fastqc , rna-seq	0	786	October 1, 2020
Error in MultiQC usegalaxy.eu support multiqc , fastqc , troubleshooting	5	2042	September 19, 2020
make.contigs/16S Microbial Analysis with Mothur fastqc , queued-gray-datasets , mothur	6	972	August 17, 2020
FastQC doesn't work usegalaxy.org support ftp-upload , fastqc , error	15	6556	July 16, 2020
RNA Seq Analysis - Trimming, FastQC usegalaxy.eu support fastqc , rna-seq	0	472	July 16, 2020
Question about tool errors in an older Galaxy release fastqc , admin , fastq , dataset , jobs	3	820	October 26, 2019
Samtools IdxStats: interpreting and troubleshooting unmapped reads qa-qc , fastqc , mapping , samtools	2	3040	August 10, 2019
FastQC HTML file not visible -- Add tool to HTML display "whitelist" whitelist , html , fastqc , admin	7	1309	July 12, 2019
How to merge or generate FASTA file with the same chromosome usegalaxy.org support fastqc , admin	5	1805	December 12, 2018
FastQC failing for conda venv issue at Galaxy Main https://usegalaxy.org -- Status: Fixed, please rerun usegalaxy.org support fastqc , server-side-error	5	479	June 21, 2019
how Find illumina adapter for cutadapt usegalaxy.org support adaptors , trimmomatic , fastqc	1	518	May 24, 2019
RNASeq analysis, FastQC usegalaxy.org support fastqc	0	338	April 7, 2019
bowtie2 mapping warnings fastqc , fastq , chip-seq	4	1929	January 7, 2019