Topics tagged fastqsanger

Topic	Replies	Views	Activity
Assistance with Filtlong Tool for Quality Filtering of FastQ Data usegalaxy.org support troubleshooting , fastqsanger	3	54	November 14, 2023
How to convert fastq.gz to fastqsanger.gz usegalaxy.org support upload , fastq , fastqsanger	4	123	August 24, 2023
Minimap2 fails immediately on mapping fasta to hg38 upload , fasta , mapping , qa-qc , fastqsanger	2	192	May 15, 2023
Fastqsanger.gz not recognized in trim galore/ D interlacer usegalaxy.org support qa-qc , fastqsangergz , fastq-deinterlacer , fastqsanger	3	184	April 13, 2023
How to convert fastq files to gz usegalaxy.org support fastqsangergz , fastqsanger , datatype	2	408	February 16, 2023
How to upload .fastq? usegalaxy.org support upload , fastq , fastqgz , fastq-format-error , fastqsanger	3	210	January 11, 2023
After Trim galore!, fastqc show the seuqence length is 20-151 usegalaxy.org support rna-seq , qa-qc , rna-star , fastqsanger	1	225	November 11, 2022
fasta file begins with carat (>) and not @ usegalaxy.org support fasta , fastqsanger , datatype	3	424	November 4, 2022
RNA Seq, error alignment after trimming usegalaxy.eu support upload , reference-annotation , gtf , rna-star , fastqsanger	7	1023	October 14, 2022
FASTQGroomer Error usegalaxy.org support fastq , qa-qc , fastqsanger	2	195	September 30, 2022
Issues with data format and running HiSat2 usegalaxy.org support upload , fastqsanger	8	607	September 21, 2022
Imput file for RNA-seq rna-seq , tutorial , transcriptomics , fastqsanger	2	268	August 25, 2022
Error running trimmomatic, hisat2 and deseq2 usegalaxy.org support qa-qc , trimmomatic , fastqsanger	11	490	August 22, 2022
fastq vs fastqsanger fastq , fastqsangergz , fastqsanger , datatype	3	1442	May 10, 2022
mapping to human reference genome usegalaxy.eu support mapping , qa-qc , fastqsanger	3	450	May 4, 2022
job paused and data not working? fasta , qa-qc , rna-star , fastqsanger , paused-jobs	1	438	September 20, 2021
de novo assembly using Trinity in Galaxy fastqc , assembly , trinity , trimmomatic , fastqsanger	7	4474	February 25, 2020
hisat2 low overall aligment rate fastq , mapping , qa-qc , hisat2 , fastqsanger	2	320	May 27, 2021
Trimmomatic error; encountered a tool detected error fastq , qa-qc , trimmomatic , fastqsanger , datatypes	6	604	May 4, 2021
Fastqsanger to fastq fastq , fastqsanger , datatype	3	1014	April 25, 2021
Unicycler failed - "reads unavailable" -- Inputs not recognized due to an incompatible datatype assignment usegalaxy.org support unicycler , fastqsangergz , ftp-upload , fastqsanger , datatype	9	1550	February 10, 2023
Job error with no error message -- Truncated uploaded inputs usegalaxy.org support dataset-collection , troubleshooting , ftp-upload , fastqsanger , collections	3	450	January 15, 2021
Problems assembling reads with Trinity usegalaxy.org support trinity , troubleshooting , qa-qc , fastqsangergz , fastqsanger	3	497	August 24, 2020
"This is a new dataset and not all of its data are available yet" for 4 hours with trimmomatic troubleshooting , trimmomatic , fastqsangergz , queued-gray-datasets , fastqsanger	6	1408	July 6, 2020
Joiner output for metaphlann2 data-manipulation , fastqsangergz , fastq-deinterlacer , fastqsanger , fastq-interlacer	10	924	October 13, 2022
downloaded fastq.gz file does not open/extract in Windows usegalaxy.org support fastqgz , fastqsanger	3	2957	March 11, 2020
Generate gene to transcript map: WARNING output usegalaxy.eu support text-manipulation , dataset-collection , trinity , troubleshooting , fastqsanger	8	1818	February 29, 2020
fasta to fastq; fastsanger.gz to fastq; SRA to fastq fastq , ncbi , sra , fastqsangergz , fastqsanger	3	3496	February 11, 2020
Difficulty in getting SRA into Galalxy usegalaxy.org support bam , fastq , ncbi , fastqsangergz , fastqsanger	6	1788	December 18, 2019
Trinity seems to be hanging fastq , trinity , fastqsangergz , server-side-delay , fastqsanger	7	748	February 10, 2023