Topics tagged fastqsanger

Topic	Replies	Views	Activity
Minimap2 fails immediately on mapping fasta to hg38 upload , qa-qc , mapping , fasta , fastqsanger	2	60	May 15, 2023
Fastqsanger.gz not recognized in trim galore/ D interlacer usegalaxy.org support fastqsangergz , fastqsanger , fastq-deinterlacer , qa-qc	3	73	April 13, 2023
How to convert fastq files to gz usegalaxy.org support fastqsangergz , datatype , fastqsanger	2	103	February 16, 2023
How to upload .fastq? usegalaxy.org support upload , fastqsanger , fastq-format-error , fastqgz , fastq	3	120	January 11, 2023
After Trim galore!, fastqc show the seuqence length is 20-151 usegalaxy.org support qa-qc , fastqsanger , rna-star , rna-seq	1	112	November 11, 2022
fasta file begins with carat (>) and not @ usegalaxy.org support fasta , fastqsanger , datatype	3	210	November 4, 2022
RNA Seq, error alignment after trimming usegalaxy.eu support reference-annotation , fastqsanger , rna-star , gtf , upload	7	527	October 14, 2022
FASTQGroomer Error usegalaxy.org support qa-qc , fastqsanger , fastq	2	118	September 30, 2022
Issues with data format and running HiSat2 usegalaxy.org support upload , fastqsanger	8	263	September 21, 2022
Imput file for RNA-seq fastqsanger , transcriptomics , tutorial , rna-seq	2	160	August 25, 2022
Error running trimmomatic, hisat2 and deseq2 usegalaxy.org support fastqsanger , trimmomatic , qa-qc	11	305	August 22, 2022
fastq vs fastqsanger datatype , fastqsanger , fastq , fastqsangergz	3	875	May 10, 2022
mapping to human reference genome usegalaxy.eu support mapping , fastqsanger , qa-qc	3	274	May 4, 2022
job paused and data not working? rna-star , qa-qc , paused-jobs , fastqsanger , fasta	1	341	September 20, 2021
de novo assembly using Trinity in Galaxy trinity , fastqc , fastqsanger , trimmomatic , assembly	7	3917	February 25, 2020
hisat2 low overall aligment rate hisat2 , fastqsanger , fastq , mapping , qa-qc	2	235	May 27, 2021
Trimmomatic error; encountered a tool detected error fastq , qa-qc , trimmomatic , fastqsanger , datatypes	6	471	May 4, 2021
Fastqsanger to fastq fastq , fastqsanger , datatype	3	696	April 25, 2021
Unicycler failed - "reads unavailable" -- Inputs not recognized due to an incompatible datatype assignment usegalaxy.org support ftp-upload , datatype , fastqsanger , unicycler , fastqsangergz	9	1296	February 10, 2023
Job error with no error message -- Truncated uploaded inputs usegalaxy.org support collections , fastqsanger , ftp-upload , troubleshooting , dataset-collection	3	352	January 15, 2021
Problems assembling reads with Trinity usegalaxy.org support trinity , troubleshooting , qa-qc , fastqsangergz , fastqsanger	3	421	August 24, 2020
"This is a new dataset and not all of its data are available yet" for 4 hours with trimmomatic troubleshooting , fastqsanger , queued-gray-datasets , fastqsangergz , trimmomatic	6	1131	July 6, 2020
Joiner output for metaphlann2 fastq-interlacer , fastq-deinterlacer , fastqsangergz , data-manipulation , fastqsanger	10	748	October 13, 2022
downloaded fastq.gz file does not open/extract in Windows usegalaxy.org support fastqsanger , fastqgz	3	2486	March 11, 2020
Generate gene to transcript map: WARNING output usegalaxy.eu support trinity , fastqsanger , troubleshooting , dataset-collection , text-manipulation	8	1499	February 29, 2020
fasta to fastq; fastsanger.gz to fastq; SRA to fastq fastq , ncbi , sra , fastqsangergz , fastqsanger	3	2817	February 11, 2020
Difficulty in getting SRA into Galalxy usegalaxy.org support bam , fastqsanger , fastqsangergz , ncbi , fastq	6	1667	December 18, 2019
Trinity seems to be hanging fastq , fastqsanger , server-side-delay , fastqsangergz , trinity	7	617	February 10, 2023
HISAT2 Problems on Galaxy usegalaxy.org support ftp-upload , datatype , fastqsanger , upload	5	480	July 18, 2019
Convert from BAM to fastq usegalaxy.org support input , fastqsanger , fastq	18	1878	May 29, 2019