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How to extract count matrix from BAM files of scRNA-seq experiment in Galaxy Server?
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1
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24
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April 10, 2025
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Code Featurecounts 2.0.8+galaxy0 at UseGalaxy.eu
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1
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28
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March 21, 2025
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Getting NCBI Reference genome indexed for tools: custom genome, reference genome, reference annotation
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10
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48
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March 14, 2025
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Is there a way to edit all headers in a BAM file?
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3
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34
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February 14, 2025
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Feature count on exon level instead gene level
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3
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49
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January 28, 2025
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UCSC Reference Genome and GTF Fatal Error no valid exons in the GTF file
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3
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57
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January 22, 2025
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Segmentation fault in featurecounts
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1
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30
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January 17, 2025
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featureCounts Fatal error: Exit code 127 ()
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6
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52
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January 8, 2025
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Trying to create a workflow to analyze my nanopore sequencing data
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1
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106
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December 9, 2024
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Troubleshooting FeatureCounts Error
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1
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84
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November 28, 2024
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featurecounts gtf error
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1
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74
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November 21, 2024
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hisat2 and featurecounts
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23
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2050
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October 28, 2024
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Feature counts built-in annotation file - no options available
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2
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113
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October 28, 2024
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built in genomes in featurecounts
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1
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86
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October 24, 2024
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About DESeq2 Errors
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2
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47
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September 17, 2024
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featureCounts- "An error occured with this data set"
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2
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168
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June 20, 2024
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FeatureCounts – What are the implications of counting paired-end reads individually or as fragments?
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2
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712
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February 14, 2025
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Deseq2 differential expression analysis
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1
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124
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April 18, 2024
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Too many duplicated sequences OR unassigned because of mapping quality
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2
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1735
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March 20, 2024
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Deseq2 Error: Differnt number of rows in featureCount files
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2
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374
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March 15, 2024
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FeatureCounts Persistent Fatal error: Exit code 255
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9
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635
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February 6, 2024
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FeatureCounts troubleshooting
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4
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468
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January 29, 2024
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Resolved: Tools are missing in my account usegalaxy.org (main server)
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7
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570
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December 15, 2023
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How to add --sjdbGTFfeatureExon to star
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3
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852
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November 20, 2023
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Deseq2 analysis output too many DEGs
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1
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261
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October 26, 2023
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FeatureCounts - can't figure out how to use it/not sure if it's working in my browser?
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1
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303
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October 25, 2023
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RNA-Seq analysis in Galaxy
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12
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740
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December 21, 2023
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Basic Question - FPKM Count - What do I use as the reference gene model?
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2
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542
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December 21, 2023
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Usage help -- single end versus paired end BAM options
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5
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618
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November 10, 2023
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annotateMyIDs (Galaxy Version 3.17.0+galaxy1) not working
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2
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348
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August 31, 2023
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