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Help with RNA Star, Featurecounts, and reference annotation choices
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1
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5
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August 19, 2025
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generate a common AnnotateMyID file from two different runs
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3
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17
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July 22, 2025
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Running FeatureCount
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1
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9
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June 12, 2025
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How to extract count matrix from BAM files of scRNA-seq experiment in Galaxy Server?
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1
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66
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April 10, 2025
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Code Featurecounts 2.0.8+galaxy0 at UseGalaxy.eu
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1
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29
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March 21, 2025
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Getting NCBI Reference genome indexed for tools: custom genome, reference genome, reference annotation
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11
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60
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July 22, 2025
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Is there a way to edit all headers in a BAM file?
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3
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50
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February 14, 2025
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Feature count on exon level instead gene level
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4
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94
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July 22, 2025
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UCSC Reference Genome and GTF Fatal Error no valid exons in the GTF file
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3
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95
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January 22, 2025
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Segmentation fault in featurecounts
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1
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39
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January 17, 2025
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featureCounts Fatal error: Exit code 127 ()
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6
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69
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January 8, 2025
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Trying to create a workflow to analyze my nanopore sequencing data
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2
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128
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July 22, 2025
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Troubleshooting FeatureCounts Error
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1
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117
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November 28, 2024
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featurecounts gtf error
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1
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91
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November 21, 2024
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hisat2 and featurecounts
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23
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2098
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October 28, 2024
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Feature counts built-in annotation file - no options available
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2
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147
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October 28, 2024
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built in genomes in featurecounts
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1
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105
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October 24, 2024
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About DESeq2 Errors
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2
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54
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September 17, 2024
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featureCounts- "An error occured with this data set"
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2
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180
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June 20, 2024
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FeatureCounts – What are the implications of counting paired-end reads individually or as fragments?
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2
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825
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February 14, 2025
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Deseq2 differential expression analysis
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2
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127
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July 22, 2025
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Too many duplicated sequences OR unassigned because of mapping quality
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2
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1897
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March 20, 2024
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Deseq2 Error: Differnt number of rows in featureCount files
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3
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390
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July 22, 2025
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FeatureCounts Persistent Fatal error: Exit code 255
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9
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686
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February 6, 2024
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FeatureCounts troubleshooting
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4
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482
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January 29, 2024
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Resolved: Tools are missing in my account usegalaxy.org (main server)
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7
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581
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December 15, 2023
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How to add --sjdbGTFfeatureExon to star
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3
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866
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November 20, 2023
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Deseq2 analysis output too many DEGs
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1
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266
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October 26, 2023
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FeatureCounts - can't figure out how to use it/not sure if it's working in my browser?
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1
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312
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October 25, 2023
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RNA-Seq analysis in Galaxy
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12
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755
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December 21, 2023
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