hisat2 and featurecounts
|
|
23
|
1937
|
October 28, 2024
|
Feature counts built-in annotation file - no options available
|
|
2
|
11
|
October 28, 2024
|
built in genomes in featurecounts
|
|
1
|
6
|
October 24, 2024
|
About DESeq2 Errors
|
|
2
|
23
|
September 17, 2024
|
featureCounts- "An error occured with this data set"
|
|
2
|
93
|
June 20, 2024
|
FeatureCounts – What are the implications of counting paired-end reads individually or as fragments?
|
|
1
|
416
|
April 23, 2024
|
Deseq2 differential expression analysis
|
|
1
|
121
|
April 18, 2024
|
Too many duplicated sequences OR unassigned because of mapping quality
|
|
2
|
1145
|
March 20, 2024
|
Deseq2 Error: Differnt number of rows in featureCount files
|
|
2
|
360
|
March 15, 2024
|
FeatureCounts Persistent Fatal error: Exit code 255
|
|
9
|
499
|
February 6, 2024
|
FeatureCounts troubleshooting
|
|
4
|
417
|
January 29, 2024
|
Resolved: Tools are missing in my account usegalaxy.org (main server)
|
|
7
|
547
|
December 15, 2023
|
How to add --sjdbGTFfeatureExon to star
|
|
3
|
771
|
November 20, 2023
|
Deseq2 analysis output too many DEGs
|
|
1
|
248
|
October 26, 2023
|
FeatureCounts - can't figure out how to use it/not sure if it's working in my browser?
|
|
1
|
260
|
October 25, 2023
|
RNA-Seq analysis in Galaxy
|
|
12
|
691
|
December 21, 2023
|
Basic Question - FPKM Count - What do I use as the reference gene model?
|
|
2
|
519
|
December 21, 2023
|
Usage help -- single end versus paired end BAM options
|
|
5
|
596
|
November 10, 2023
|
annotateMyIDs (Galaxy Version 3.17.0+galaxy1) not working
|
|
2
|
335
|
August 31, 2023
|
Problems with attributes in featureCounts -- GFF3 input instead of GTF
|
|
4
|
2857
|
December 21, 2023
|
Featurecounts error using a gene annotation from a gff3 file
|
|
4
|
1729
|
December 21, 2023
|
MultiQC in RNA-seq Primary Analysis workflow
|
|
1
|
501
|
August 7, 2023
|
featureCounts strand setting and impact on DESeq2 results
|
|
2
|
1115
|
July 26, 2023
|
RNA Seq analysis - DESEQ2 no significative p-value/log2(FC)
|
|
1
|
341
|
July 16, 2023
|
Troubleshooting with FeatureCounts
|
|
3
|
710
|
June 21, 2023
|
Annotation of Deseq2 results not giving full results
|
|
4
|
382
|
December 21, 2023
|
missing reference genome (Aedes aegypti AaegL5.0)
|
|
5
|
339
|
June 13, 2023
|
Sort status of BAM files after RNA STAR
|
|
2
|
557
|
May 22, 2023
|
for me after feature counts dseq2 is not working
|
|
1
|
302
|
May 15, 2023
|
Featurecounts & Strandedness
|
|
1
|
555
|
May 1, 2023
|