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FeatureCounts – What are the implications of counting paired-end reads individually or as fragments?
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1
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44
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April 23, 2024
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Deseq2 differential expression analysis
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1
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33
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April 18, 2024
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Too many duplicated sequences OR unassigned because of mapping quality
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2
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118
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March 20, 2024
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Deseq2 Error: Differnt number of rows in featureCount files
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2
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314
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March 15, 2024
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FeatureCounts Persistent Fatal error: Exit code 255
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9
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201
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February 6, 2024
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FeatureCounts troubleshooting
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4
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220
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January 29, 2024
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Resolved: Tools are missing in my account usegalaxy.org (main server)
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7
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404
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December 15, 2023
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How to add --sjdbGTFfeatureExon to star
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3
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608
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November 20, 2023
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Deseq2 analysis output too many DEGs
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1
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186
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October 26, 2023
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DESEQ2 - How does it work?
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8
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4212
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October 26, 2023
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FeatureCounts - can't figure out how to use it/not sure if it's working in my browser?
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1
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177
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October 25, 2023
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RNA-Seq analysis in Galaxy
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12
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468
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December 21, 2023
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Basic Question - FPKM Count - What do I use as the reference gene model?
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2
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313
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December 21, 2023
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Usage help -- single end versus paired end BAM options
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5
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435
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November 10, 2023
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annotateMyIDs (Galaxy Version 3.17.0+galaxy1) not working
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2
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219
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August 31, 2023
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Problems with attributes in featureCounts -- GFF3 input instead of GTF
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4
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2638
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December 21, 2023
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Featurecounts error using a gene annotation from a gff3 file
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4
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957
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December 21, 2023
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MultiQC in RNA-seq Primary Analysis workflow
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1
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345
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August 7, 2023
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featureCounts strand setting and impact on DESeq2 results
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2
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666
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July 26, 2023
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RNA Seq analysis - DESEQ2 no significative p-value/log2(FC)
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1
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249
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July 16, 2023
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Undefined error after running DESeq2
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4
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257
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December 21, 2023
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CummeRbund unable to get expression plot/bar plot
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1
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172
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July 3, 2023
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Troubleshooting with FeatureCounts
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3
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478
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June 21, 2023
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Annotation of Deseq2 results not giving full results
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4
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289
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December 21, 2023
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missing reference genome (Aedes aegypti AaegL5.0)
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5
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271
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June 13, 2023
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Sort status of BAM files after RNA STAR
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2
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389
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May 22, 2023
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for me after feature counts dseq2 is not working
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1
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263
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May 15, 2023
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Featurecounts & Strandedness
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1
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360
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May 1, 2023
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Error in Stringtie Results
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3
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561
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December 21, 2023
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Sample error in running deseq2
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2
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446
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April 29, 2023
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