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How to add --sjdbGTFfeatureExon to star
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3
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954
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November 20, 2023
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Deseq2 analysis output too many DEGs
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1
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292
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October 26, 2023
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FeatureCounts - can't figure out how to use it/not sure if it's working in my browser?
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1
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375
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October 25, 2023
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RNA-Seq analysis in Galaxy
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12
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879
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December 21, 2023
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Basic Question - FPKM Count - What do I use as the reference gene model?
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2
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566
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December 21, 2023
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Usage help -- single end versus paired end BAM options
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5
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722
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November 10, 2023
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Problems with attributes in featureCounts -- GFF3 input instead of GTF
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4
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2991
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December 21, 2023
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Featurecounts error using gene annotation from a gff3 file
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4
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2971
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December 21, 2023
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MultiQC in RNA-seq Primary Analysis workflow
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2
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576
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March 17, 2026
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featureCounts strand setting and impact on DESeq2 results
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3
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1664
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July 22, 2025
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RNA Seq analysis - DESEQ2 no significative p-value/log2(FC)
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1
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418
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July 16, 2023
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Troubleshooting with FeatureCounts
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3
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1082
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June 21, 2023
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Annotation of Deseq2 results not giving full results
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4
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485
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December 21, 2023
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missing reference genome (Aedes aegypti AaegL5.0)
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5
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403
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June 13, 2023
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for me after feature counts dseq2 is not working
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1
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325
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May 15, 2023
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Featurecounts & Strandedness
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1
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710
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May 1, 2023
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Error in Stringtie Results
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3
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955
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December 21, 2023
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Sample error in running deseq2
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2
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650
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April 29, 2023
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Very low assigned reads in featureCounts
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3
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1712
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December 21, 2023
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Rat reference genome selection
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2
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652
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April 26, 2023
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STAR GTF file error for newbie
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4
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843
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April 24, 2023
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Dexseq stuck on 'Installing tools dependencies' on local instance of Galaxy
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3
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2057
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April 21, 2023
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Help in How to generate a GFF file
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3
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814
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December 21, 2023
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Feature counting missing counts
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4
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646
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December 21, 2023
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DESeq2 giving 0 output lines
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2
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361
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March 17, 2023
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annotateMyIDs failure
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4
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327
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April 8, 2026
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FeatureCounts gives 0 for all genes
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1
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359
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February 21, 2023
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Featurecounts in built genome giving no read assignments
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3
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532
|
February 16, 2023
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DESEQ2 analysis with galaxy
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10
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1604
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July 22, 2025
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Adding new Reference genomes to the DeepVariant deep learning-based variant caller
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1
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799
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January 26, 2023
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