|
Problems with attributes in featureCounts -- GFF3 input instead of GTF
|
|
4
|
2901
|
December 21, 2023
|
|
Featurecounts error using a gene annotation from a gff3 file
|
|
4
|
2238
|
December 21, 2023
|
|
MultiQC in RNA-seq Primary Analysis workflow
|
|
1
|
529
|
August 7, 2023
|
|
featureCounts strand setting and impact on DESeq2 results
|
|
2
|
1385
|
July 26, 2023
|
|
RNA Seq analysis - DESEQ2 no significative p-value/log2(FC)
|
|
1
|
359
|
July 16, 2023
|
|
Troubleshooting with FeatureCounts
|
|
3
|
923
|
June 21, 2023
|
|
Annotation of Deseq2 results not giving full results
|
|
4
|
427
|
December 21, 2023
|
|
missing reference genome (Aedes aegypti AaegL5.0)
|
|
5
|
344
|
June 13, 2023
|
|
Sort status of BAM files after RNA STAR
|
|
2
|
603
|
May 22, 2023
|
|
for me after feature counts dseq2 is not working
|
|
1
|
306
|
May 15, 2023
|
|
Featurecounts & Strandedness
|
|
1
|
627
|
May 1, 2023
|
|
Error in Stringtie Results
|
|
3
|
864
|
December 21, 2023
|
|
Sample error in running deseq2
|
|
2
|
591
|
April 29, 2023
|
|
Very low assigned reads in featureCounts
|
|
3
|
1446
|
December 21, 2023
|
|
Rat reference genome selection
|
|
2
|
614
|
April 26, 2023
|
|
STAR GTF file error for newbie
|
|
4
|
739
|
April 24, 2023
|
|
Dexseq stuck on 'Installing tools dependencies' on local instance of Galaxy
|
|
3
|
2011
|
April 21, 2023
|
|
Help in How to generate a GFF file
|
|
3
|
751
|
December 21, 2023
|
|
Feature counting missing counts
|
|
4
|
585
|
December 21, 2023
|
|
DESeq2 giving 0 output lines
|
|
2
|
340
|
March 17, 2023
|
|
annotateMyIDs failure
|
|
3
|
308
|
March 6, 2023
|
|
FeatureCounts gives 0 for all genes
|
|
1
|
315
|
February 21, 2023
|
|
Featurecounts in built genome giving no read assignments
|
|
3
|
465
|
February 16, 2023
|
|
DESEQ2 analysis with galaxy
|
|
9
|
1275
|
February 8, 2023
|
|
Adding new Reference genomes to the DeepVariant deep learning-based variant caller
|
|
1
|
769
|
January 26, 2023
|
|
featureCounts gene_name
|
|
2
|
312
|
January 14, 2023
|
|
DESeq2 Fatal error In Sys.setlocale("LC_MESSAGES", "en_US.UTF-8") :
|
|
1
|
555
|
January 5, 2023
|
|
Error while using htseq count
|
|
2
|
339
|
December 21, 2023
|
|
Stringtie not outputting counts anymore
|
|
3
|
681
|
January 3, 2023
|
|
Percentage Splice calculation using Galaxy
|
|
1
|
239
|
January 3, 2023
|