filter-bam
| Topic | Replies | Views | Activity | |
|---|---|---|---|---|
| how to perfom Samtools view tagged.bam | grep -c “miRNAname” >> genome-basedcounts.tsv |
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3 | 43 | July 21, 2025 |
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MarkDuplicates- inadequate memory
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1 | 45 | February 10, 2025 |
| Multi mapped reads |
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1 | 74 | September 17, 2024 |
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downsampling many bam files in parallel
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2 | 162 | July 8, 2024 |
| samtools view problems when extracting subset of fastq |
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2 | 528 | October 31, 2023 |
| Filter BAM dataset on spliced alignments |
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2 | 399 | September 21, 2022 |
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MACS2 scientific result troubleshooting
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6 | 901 | June 16, 2022 |
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To get a file of unmapped reads after RNA star
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1 | 650 | March 7, 2022 |
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Filtering reads in a BAM dataset
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5 | 2184 | January 14, 2022 |
| FilterSamReads error |
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0 | 658 | August 16, 2020 |
| How to subset a BAM by specific name? |
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2 | 946 | May 25, 2020 |
| Removing spliced alignment from BAM after Hisat2 |
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2 | 595 | December 14, 2019 |
| Filter SAM or BAM tool -- "Select regions" filtering term formatting |
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6 | 2031 | May 23, 2019 |
| Problem filtering by insert size using Bamtools |
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5 | 1760 | February 7, 2019 |