Topics tagged freebayes

Topic	Replies	Views	Activity
Ways to make a variant calling for RNA Seq (paired-end) usegalaxy.org support rna-seq , rna-star , freebayes , vcf	5	180	April 12, 2023
How to calculate allelic imbalance in usegalaxy rna-seq , snp , freebayes , variant , usegalaxy	2	297	March 17, 2021
GATK4 baserecalibrator usegalaxy.org support gatk4 , freebayes , variant	4	666	March 17, 2021
How to filter FreeBayes output (vcf) file to specific region (SNP) bed file in usegalaxy vcf , bed , freebayes , snp , usegalaxy	1	532	February 4, 2021
Error FreeBayes usegalaxy , freebayes	0	245	December 25, 2020
How to filter rare variants (10%) out variant , freebayes	4	460	September 18, 2019
FreeBayes: installing onto local instance of Galaxy freebayes , conda-dependency , conda , galaxy-local , tool-install	3	566	September 13, 2019
Calculating variant allele frequency from FreeBayes VCF variant , freebayes	3	3563	July 4, 2019
Help!! Variant calling on BAM with Freebayes taking a long time to process freebayes	3	607	May 25, 2019
Change pileup to vcf format allowing for great depth (100.000 reads)??? usegalaxy.org support varscan , freebayes , mpileup , vcf , variant	1	968	December 6, 2018