Topics tagged freebayes

Topic	Replies	Views	Activity
How to turn .bam into VCF usegalaxy.org support freebayes	7	47	January 15, 2025
FreeBayes variant calling and Snpeff variant annotation Resources freebayes , custom-genome , custom-build , resources , tool-help , variant-analysis , snpeff , snpeff_build_gb	19	435	September 17, 2024
Sus Scrofa 11.1 reference genome in Freebayes usegalaxy.eu support server-admin , freebayes , mapping , reference-genome	1	345	June 27, 2023
freebayes parameter selection issue freebayes , vcf	2	327	June 9, 2023
Ways to make a variant calling for RNA Seq (paired-end) usegalaxy.org support freebayes , transcriptomics , variant-analysis , vcf , rna_star	5	758	April 12, 2023
How to calculate allelic imbalance in usegalaxy freebayes , usegalaxy , variant-analysis	2	477	March 17, 2021
GATK4 baserecalibrator usegalaxy.org support freebayes , gatk4	4	1154	March 17, 2021
How to filter FreeBayes output (vcf) file to specific region (SNP) bed file in usegalaxy bed , freebayes , usegalaxy , variant-analysis	1	805	February 4, 2021
Error FreeBayes freebayes , usegalaxy	0	362	December 25, 2020
How to filter rare variants (10%) out freebayes	4	742	September 18, 2019
FreeBayes: installing onto local instance of Galaxy tool-install , freebayes , galaxy-local , conda , conda-dependency	3	774	September 13, 2019
Calculating variant allele frequency from FreeBayes VCF freebayes	3	5763	July 4, 2019
Help!! Variant calling on BAM with Freebayes taking a long time to process freebayes	3	819	May 25, 2019
Change pileup to vcf format allowing for great depth (100.000 reads)??? usegalaxy.org support freebayes , variant-analysis	1	1333	December 6, 2018