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Bowtie2 mapping rate low
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|
1
|
50
|
November 9, 2021
|
|
What can i do with genes that appear as NA but have statistics ?
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4
|
95
|
September 28, 2021
|
|
RNA STAR error on trimmomtaic files
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|
7
|
120
|
September 14, 2021
|
|
Does FeatureCount Built-in include non coding region?
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|
2
|
110
|
August 19, 2021
|
|
Couldn't annotate any gene Name using Annotate DESeq2/DEXSeq output tables
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|
5
|
166
|
July 31, 2021
|
|
Difference Between using mm10 vs GRCm38 GFF/GTF
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|
1
|
118
|
July 19, 2021
|
|
Differentially expressed genes
|
|
12
|
276
|
June 30, 2021
|
|
DEseq2 error with different numbers of rows
|
|
12
|
415
|
May 13, 2021
|
|
RNA-STAR and hg38 GTF reference annotation
|
|
6
|
3780
|
October 13, 2020
|
|
MethylDackel running time too long
|
|
18
|
232
|
June 15, 2021
|
|
Error in Qualimap RNA-seq QC
|
|
12
|
407
|
June 7, 2021
|
|
The use of different built-in reference genomes -- Reference annotation + Reference genome for RNA-seq analysis
|
|
4
|
132
|
May 20, 2021
|
|
GTF data in Galaxy
|
|
1
|
100
|
May 17, 2021
|
|
annotateMyIDs fatal error code 1
|
|
3
|
150
|
May 3, 2021
|
|
Reference annotation GTF options for UCSC's mouse builds mm9, mm10
|
|
4
|
331
|
March 18, 2021
|
|
Kept seeing "Illegal stran" when using SAM/BAM to count matrix
|
|
8
|
218
|
February 12, 2021
|
|
Custom reference genome annotation
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|
4
|
161
|
January 25, 2021
|
|
scRNAseq Galaxy workflow
|
|
13
|
851
|
December 11, 2020
|
|
Filter GTF attributes by a list of attributes
|
|
3
|
294
|
December 4, 2020
|
|
hg19 GFT file for ChIPseeker tool
|
|
2
|
524
|
November 4, 2020
|
|
Another STAR error -- Resolved
|
|
8
|
702
|
October 2, 2020
|
|
how to convert gtf-to-gff?
|
|
3
|
2417
|
July 27, 2020
|
|
How to generate counts from my HISAT2 alignment (BAM file)?
|
|
1
|
745
|
June 9, 2020
|
|
MSTRG to Gene Name Conversion
|
|
3
|
1692
|
May 15, 2020
|
|
Problems with attributes in featureCounts -- GFF3 input instead of GTF
|
|
1
|
1330
|
February 24, 2020
|
|
Unassiged_nofeatures featurecounts results
|
|
1
|
345
|
December 19, 2019
|
|
RNA Star does not recognize ENCODE gtf files
|
|
3
|
912
|
November 26, 2019
|
|
Format help for GTF datasets
|
|
3
|
1132
|
September 23, 2019
|
|
How to locate a reference annotation GFT file: example sacCer3 + others
|
|
2
|
581
|
August 30, 2019
|
|
Comments on displaying VCF and GTF with IGV from Galaxy
|
|
5
|
814
|
June 24, 2019
|