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Bowtie2 mapping rate low
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1
|
51
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November 9, 2021
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What can i do with genes that appear as NA but have statistics ?
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4
|
96
|
September 28, 2021
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RNA STAR error on trimmomtaic files
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7
|
121
|
September 14, 2021
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Does FeatureCount Built-in include non coding region?
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2
|
110
|
August 19, 2021
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Couldn't annotate any gene Name using Annotate DESeq2/DEXSeq output tables
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5
|
168
|
July 31, 2021
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Difference Between using mm10 vs GRCm38 GFF/GTF
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1
|
119
|
July 19, 2021
|
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Differentially expressed genes
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12
|
277
|
June 30, 2021
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DEseq2 error with different numbers of rows
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12
|
416
|
May 13, 2021
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RNA-STAR and hg38 GTF reference annotation
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6
|
3781
|
October 13, 2020
|
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MethylDackel running time too long
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18
|
233
|
June 15, 2021
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Error in Qualimap RNA-seq QC
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12
|
408
|
June 7, 2021
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The use of different built-in reference genomes -- Reference annotation + Reference genome for RNA-seq analysis
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4
|
133
|
May 20, 2021
|
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GTF data in Galaxy
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1
|
101
|
May 17, 2021
|
|
annotateMyIDs fatal error code 1
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3
|
151
|
May 3, 2021
|
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Reference annotation GTF options for UCSC's mouse builds mm9, mm10
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4
|
332
|
March 18, 2021
|
|
Kept seeing "Illegal stran" when using SAM/BAM to count matrix
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8
|
219
|
February 12, 2021
|
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Custom reference genome annotation
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4
|
163
|
January 25, 2021
|
|
scRNAseq Galaxy workflow
|
|
13
|
852
|
December 11, 2020
|
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Filter GTF attributes by a list of attributes
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|
3
|
295
|
December 4, 2020
|
|
hg19 GFT file for ChIPseeker tool
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2
|
524
|
November 4, 2020
|
|
Another STAR error -- Resolved
|
|
8
|
703
|
October 2, 2020
|
|
how to convert gtf-to-gff?
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|
3
|
2419
|
July 27, 2020
|
|
How to generate counts from my HISAT2 alignment (BAM file)?
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|
1
|
746
|
June 9, 2020
|
|
MSTRG to Gene Name Conversion
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|
3
|
1693
|
May 15, 2020
|
|
Problems with attributes in featureCounts -- GFF3 input instead of GTF
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|
1
|
1331
|
February 24, 2020
|
|
Unassiged_nofeatures featurecounts results
|
|
1
|
346
|
December 19, 2019
|
|
RNA Star does not recognize ENCODE gtf files
|
|
3
|
914
|
November 26, 2019
|
|
Format help for GTF datasets
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|
3
|
1134
|
September 23, 2019
|
|
How to locate a reference annotation GFT file: example sacCer3 + others
|
|
2
|
582
|
August 30, 2019
|
|
Comments on displaying VCF and GTF with IGV from Galaxy
|
|
5
|
815
|
June 24, 2019
|