|
Bowtie2 mapping rate low
|
|
1
|
50
|
November 9, 2021
|
|
HISAT2 Virus Alignment Settings
|
|
2
|
52
|
October 28, 2021
|
|
What can i do with genes that appear as NA but have statistics ?
|
|
4
|
95
|
September 28, 2021
|
|
Attempting to use MultiQC to visualize alignment with HISAT2 but the HISAT2 output collection does not appear
|
|
4
|
217
|
August 24, 2021
|
|
HISAT2 jobs waiting to run
|
|
1
|
83
|
August 16, 2021
|
|
HISAT2 alignment results in very low in number of mapped reads
|
|
7
|
267
|
August 7, 2021
|
|
hisat2 low overall aligment rate
|
|
2
|
93
|
May 27, 2021
|
|
HISAT2 errors meaning
|
|
9
|
1117
|
December 3, 2021
|
|
Problem with HISAT2 detection of reads mapping to repeats
|
|
8
|
994
|
May 5, 2021
|
|
HISAT2 on Cutadapt output
|
|
3
|
158
|
April 15, 2021
|
|
HISAT2 reports samples with 0% alignment rates
|
|
3
|
159
|
February 5, 2021
|
|
Tophat vs HISAT2
|
|
2
|
246
|
January 11, 2021
|
|
Identification of Cre-recombinase in ScRNAseq data
|
|
3
|
203
|
January 2, 2021
|
|
Genome of interest not listed for using HISAT2
|
|
7
|
276
|
December 27, 2020
|
|
Please add the Xenopus laevis reference genome to Galaxy -- Indexing already planned, use a Custom Genome/Build for now
|
|
6
|
318
|
December 18, 2020
|
|
How can I find that a RNAseq data is stranded or un-stranded by usegalaxy tools?
|
|
3
|
350
|
November 17, 2020
|
|
HISAT2 Empty summary file
|
|
0
|
174
|
October 22, 2020
|
|
Cannot download bam csi index with HISAT2 or RNA STAR
|
|
2
|
206
|
July 28, 2020
|
|
Hisat2 BAM file output does not include stats -- Not a default output but is an option on the tool form
|
|
3
|
467
|
June 16, 2020
|
|
How to generate counts from my HISAT2 alignment (BAM file)?
|
|
1
|
745
|
June 9, 2020
|
|
HISAT2 long run time
|
|
0
|
217
|
May 22, 2020
|
|
HISAT2 and job stages, resources, PLAZA genomes, avoiding deprecated tools
|
|
1
|
186
|
May 19, 2020
|
|
HISAT2 error: Auto-detection
|
|
7
|
515
|
May 19, 2020
|
|
Data paused and keep getting error: Tophat RNA data -- Tophat/Tophat2 Deprecated, use HISAT2
|
|
1
|
270
|
May 8, 2020
|
|
Tophat not working??? - Deprecated tool, use HISAT2 instead
|
|
6
|
408
|
February 29, 2020
|
|
Custom genome help and troubleshooting plus where to find HISAT2 alignment statistics
|
|
5
|
715
|
October 31, 2019
|
|
Arabidopsis thaliana TAIR10 genome for HISAT2
|
|
2
|
456
|
August 22, 2019
|
|
No-mixed behaviour HISAT2
|
|
8
|
694
|
July 19, 2019
|
|
What exactly are the "built-in references" in Galaxy's HISAT2?
|
|
2
|
882
|
March 12, 2019
|
|
Problems mapping with HISAT2 & BOWTIE2
|
|
4
|
1309
|
February 28, 2019
|
