hisat2

Topic Replies Views Activity
HISAT2 errors meaning
usegalaxy.eu support
rna-seq ,  error ,  hisat2
3 40 May 27, 2020
Hisat2 BAM file output does not include stats -- Not a default output but is an option on the tool form
usegalaxy.eu support
rna-seq ,  bam ,  hisat2
3 44 May 22, 2020
HISAT2 long run time
usegalaxy.org support
hisat2
1 41 May 22, 2020
HISAT2 and job stages, resources, PLAZA genomes, avoiding deprecated tools
usegalaxy.org support
custom-genome ,  tool-deprecated ,  hisat2 ,  custom-build ,  plaza
2 30 May 19, 2020
HISAT2 error: Auto-detection
usegalaxy.org support
metadata ,  error ,  hisat2
8 239 May 19, 2020
Data paused and keep getting error: Tophat RNA data -- Tophat/Tophat2 Deprecated, use HISAT2
tophat ,  mapping ,  transcriptomics ,  tool-deprecated ,  hisat2
2 30 May 8, 2020
Tophat not working??? - Deprecated tool, use HISAT2 instead
troubleshooting ,  mapping ,  tool-deprecated ,  hisat2
7 174 February 29, 2020
Custom genome help and troubleshooting plus where to find HISAT2 alignment statistics
custom-genome ,  hisat2 ,  custom-build
6 204 October 31, 2019
Problem with HISAT2 detection of reads mapping to repeats
hisat2 ,  rna-star
8 194 October 15, 2019
Arabidopsis thaliana TAIR10 genome for HISAT2
usegalaxy.org support
custom-genome ,  hisat2 ,  reference-genome ,  datacashe
3 137 August 22, 2019
No-mixed behaviour HISAT2
hisat2
9 265 July 19, 2019
What exactly are the "built-in references" in Galaxy's HISAT2?
featurecounts ,  hisat2 ,  reference-annotation ,  gtf ,  reference-genome
3 381 March 12, 2019
Problems mapping with HISAT2 & BOWTIE2
usegalaxy.org support
bam ,  bowtie2 ,  view-dataset ,  hisat2
5 418 February 28, 2019