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I can't visualize vcf file after using snippy tool using igv
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1
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9
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June 13, 2025
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How to map a collection of individual samples against a custom reference genome with RNA STAR
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4
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32
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April 6, 2025
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Archived history
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3
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19
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April 1, 2025
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Haplotype analysis
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7
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38
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March 24, 2025
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protein domain and motif identification
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1
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11
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March 7, 2025
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protein sequence
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1
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15
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March 7, 2025
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Trimming with different parameters/tools give vastly different end results.
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2
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72
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February 25, 2025
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Global change in splicing
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3
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19
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January 15, 2025
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IGV Download Problem
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3
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31
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December 5, 2024
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false positives and negatives when long reads corrected using short reads
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2
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16
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November 20, 2024
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sudden change in STAR alignment of RNA-seq data
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1
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44
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October 17, 2024
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Fail to load GFF3 into IGV
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1
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83
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September 16, 2024
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Genome index STAR
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1
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47
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August 13, 2024
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DeepVariant low quality sorting
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1
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62
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July 31, 2024
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Stringtie Returning Different Transcript Counts Using Same Reference Annotation
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9
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72
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July 23, 2024
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snippy analysis on bacterial isolates
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3
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128
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July 17, 2024
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RNA alignment not detecting indels
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5
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101
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June 17, 2024
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No link for UCSC to visualise datasets
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23
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345
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May 24, 2024
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plotDEXSeq no output
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5
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118
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May 1, 2024
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UCSC link using Galaxy to see RNA seq peaks
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1
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154
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April 30, 2024
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Adding the tardigrade (H. exemplaris) genome to Galaxy
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2
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170
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April 11, 2024
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Is Samtools Faidx Available on Galaxy US?
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4
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251
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April 9, 2024
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how to run custom python and matlab scripts
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2
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250
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March 5, 2024
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Display reference sequence and gff in one go to local IGV
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3
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686
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January 29, 2024
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Reference genomes at public Galaxy servers: GRCh38/hg38 example
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1
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1078
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January 29, 2024
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ChIP-seq: MACS2 discovered peaks with over 2.0 fold enrichment show no difference when inspected at the IGB browser.
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4
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383
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January 12, 2024
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How can I make the IGV range smaller
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7
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934
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January 12, 2024
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Analysis of splice variants.
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4
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339
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January 2, 2024
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Error while wieving .vcf file on IGV
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1
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541
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December 21, 2023
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paired-end histogram failure
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3
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277
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December 12, 2023
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