Topics tagged igv

Topic	Replies	Views	Activity
Is a "?" in featureCounts' database field a problem when using a non-built-in genome? usegalaxy.org support custom-genome , transcriptomics , igv , custom-build	1	25	November 24, 2025
BAM index, fasta indexes, display applications, custom genome builds, IGV Resources custom-genome , mapping , igv , custom-build , resources	3	87	September 22, 2025
I can't visualize vcf file after using snippy tool using igv igv	1	16	June 13, 2025
How to map a collection of individual samples against a custom reference genome with RNA STAR usegalaxy.eu support troubleshooting , igv	4	64	April 6, 2025
Archived history Resources igv , history-archive , resources	3	51	April 1, 2025
Haplotype analysis usegalaxy.org support igv , variant-analysis	7	88	March 24, 2025
protein domain and motif identification usegalaxy.eu support text-manipulation , igv , genome-annotation	1	29	March 7, 2025
protein sequence usegalaxy.eu support text-manipulation , igv , genome-annotation	1	28	March 7, 2025
Trimming with different parameters/tools give vastly different end results. transcriptomics , igv , quality-control , srna	2	181	February 25, 2025
Global change in splicing usegalaxy.org support galaxy-local , transcriptomics , igv , variant-analysis	3	48	January 15, 2025
IGV Download Problem usegalaxy.org support gtn-tutorial , mapping , igv	3	52	December 5, 2024
false positives and negatives when long reads corrected using short reads usegalaxy.eu support troubleshooting , igv , variant-analysis	2	37	November 20, 2024
sudden change in STAR alignment of RNA-seq data usegalaxy.eu support transcriptomics , igv , cutadapt , rna_star	1	62	October 17, 2024
Fail to load GFF3 into IGV usegalaxy.org support troubleshooting , igv	1	122	September 16, 2024
Genome index STAR transcriptomics , igv	1	73	August 13, 2024
DeepVariant low quality sorting mapping , igv , tool-help , variant-analysis	1	84	July 31, 2024
Stringtie Returning Different Transcript Counts Using Same Reference Annotation igv	9	159	July 23, 2024
snippy analysis on bacterial isolates igv , tool-help , variant-analysis , snippy	3	179	July 17, 2024
RNA alignment not detecting indels mapping , transcriptomics , igv	5	144	June 17, 2024
No link for UCSC to visualise datasets database , troubleshooting , igv , ucsc	23	424	May 24, 2024
plotDEXSeq no output usegalaxy.org support text-manipulation , igv , tool-help , plotdexseq	5	154	May 1, 2024
UCSC link using Galaxy to see RNA seq peaks igv , ucsc , visualization , tool-help	1	177	April 30, 2024
Adding the tardigrade (H. exemplaris) genome to Galaxy database , reference-index , igv , reference-genome	2	182	April 11, 2024
Is Samtools Faidx Available on Galaxy US? usegalaxy.org support troubleshooting , igv	4	280	April 9, 2024
how to run custom python and matlab scripts jupyter , igv , interactive-tools	2	284	March 5, 2024
Display reference sequence and gff in one go to local IGV tool-dev , galaxy-local , igv	3	736	January 29, 2024
Reference genomes at public Galaxy servers: GRCh38/hg38 example Resources reference-index , custom-genome , igv , reference-genome , resources	0	1344	January 29, 2024
ChIP-seq: MACS2 discovered peaks with over 2.0 fold enrichment show no difference when inspected at the IGB browser. usegalaxy.org support chip-seq , igv	4	437	January 12, 2024
How can I make the IGV range smaller usegalaxy.org support igv	7	1020	January 12, 2024
Analysis of splice variants. gtn-tutorial , transcriptomics , igv , rna-seq , vcf	4	382	January 2, 2024