|
How to map a collection of individual samples against a custom reference genome with RNA STAR
|
|
4
|
25
|
April 6, 2025
|
|
Archived history
|
|
3
|
17
|
April 1, 2025
|
|
Haplotype analysis
|
|
7
|
16
|
March 24, 2025
|
|
protein domain and motif identification
|
|
1
|
8
|
March 7, 2025
|
|
protein sequence
|
|
1
|
13
|
March 7, 2025
|
|
Trimming with different parameters/tools give vastly different end results.
|
|
2
|
42
|
February 25, 2025
|
|
Global change in splicing
|
|
3
|
16
|
January 15, 2025
|
|
IGV Download Problem
|
|
3
|
27
|
December 5, 2024
|
|
false positives and negatives when long reads corrected using short reads
|
|
2
|
12
|
November 20, 2024
|
|
sudden change in STAR alignment of RNA-seq data
|
|
1
|
35
|
October 17, 2024
|
|
Fail to load GFF3 into IGV
|
|
1
|
68
|
September 16, 2024
|
|
Genome index STAR
|
|
1
|
36
|
August 13, 2024
|
|
DeepVariant low quality sorting
|
|
1
|
59
|
July 31, 2024
|
|
Stringtie Returning Different Transcript Counts Using Same Reference Annotation
|
|
9
|
57
|
July 23, 2024
|
|
snippy analysis on bacterial isolates
|
|
3
|
104
|
July 17, 2024
|
|
RNA alignment not detecting indels
|
|
5
|
98
|
June 17, 2024
|
|
No link for UCSC to visualise datasets
|
|
23
|
330
|
May 24, 2024
|
|
plotDEXSeq no output
|
|
5
|
118
|
May 1, 2024
|
|
UCSC link using Galaxy to see RNA seq peaks
|
|
1
|
154
|
April 30, 2024
|
|
Adding the tardigrade (H. exemplaris) genome to Galaxy
|
|
2
|
169
|
April 11, 2024
|
|
Is Samtools Faidx Available on Galaxy US?
|
|
4
|
236
|
April 9, 2024
|
|
how to run custom python and matlab scripts
|
|
2
|
240
|
March 5, 2024
|
|
Display reference sequence and gff in one go to local IGV
|
|
3
|
662
|
January 29, 2024
|
|
Reference genomes at public Galaxy servers: GRCh38/hg38 example
|
|
1
|
862
|
January 29, 2024
|
|
ChIP-seq: MACS2 discovered peaks with over 2.0 fold enrichment show no difference when inspected at the IGB browser.
|
|
4
|
367
|
January 12, 2024
|
|
How can I make the IGV range smaller
|
|
7
|
881
|
January 12, 2024
|
|
Analysis of splice variants.
|
|
4
|
321
|
January 2, 2024
|
|
Error while wieving .vcf file on IGV
|
|
1
|
540
|
December 21, 2023
|
|
paired-end histogram failure
|
|
3
|
277
|
December 12, 2023
|
|
Track height in trackster
|
|
2
|
260
|
November 20, 2023
|