# \#jupyter **URL:** https://help.galaxyproject.org/tag/jupyter/141.md [Latest](https://help.galaxyproject.org/latest.md) · [Categories](https://help.galaxyproject.org/categories.md) · [Tags](https://help.galaxyproject.org/tags.md) --- ## [Notebooks: more about memory resources and HTP analysis](https://help.galaxyproject.org/t/notebooks-more-about-memory-resources-and-htp-analysis/18267)
**Author:** [@0808](https://help.galaxyproject.org/u/0808)\ **Replies:** 2\ **Last updated:** [August 11, 2026, 7:31am UTC](https://help.galaxyproject.org/t/notebooks-more-about-memory-resources-and-htp-analysis/18267 "2026-08-11T07:31:33Z")
Title: Request for higher-memory resource for RSEM v1.3.1 due to OOM Hello Galaxy Europe Support Team, I am reprocessing the public PRJEB40416 gastric cancer RNA-seq dataset on usegalaxy.eu. STAR alignment has comple… --- ## [May PICRUSt2 be updated to version 2.6.0 or above, please?](https://help.galaxyproject.org/t/may-picrust2-be-updated-to-version-2-6-0-or-above-please/17443)
**Author:** [@lyisrae1](https://help.galaxyproject.org/u/lyisrae1)\ **Replies:** 1\ **Last updated:** [February 12, 2026, 7:32pm UTC](https://help.galaxyproject.org/t/may-picrust2-be-updated-to-version-2-6-0-or-above-please/17443 "2026-02-12T19:32:38Z")
Hello, May Galaxy Australia please update the version of PICRUSt2? It is now three years out of date. Additionally, the versions after 2.6.0 now use a new database to generate predicted metagenome output that results in… --- ## [Running Interactive Jupyter Notebook - Galaxy could not be reached](https://help.galaxyproject.org/t/running-interactive-jupyter-notebook-galaxy-could-not-be-reached/15332)
**Author:** [@vant](https://help.galaxyproject.org/u/vant)\ **Replies:** 3\ **Last updated:** [April 30, 2025, 7:03pm UTC](https://help.galaxyproject.org/t/running-interactive-jupyter-notebook-galaxy-could-not-be-reached/15332 "2025-04-30T19:03:59Z")
I am trying to run an interactive Jupyter Notebook instance on the galaxyp browser. It says it is running in the Active Interactive Tools panel, but when I try to open it, it says Galaxy could not be reached. I’ve tried … --- ## [Jupyter Notebook Issue in Galaxy Australia](https://help.galaxyproject.org/t/jupyter-notebook-issue-in-galaxy-australia/14838)
**Author:** [@Tharinda\_Karawita](https://help.galaxyproject.org/u/Tharinda_Karawita)\ **Replies:** 2\ **Last updated:** [February 25, 2025, 2:53am UTC](https://help.galaxyproject.org/t/jupyter-notebook-issue-in-galaxy-australia/14838 "2025-02-25T02:53:25Z")
I encountered an issue while trying to access the Jupyter Notebook interactive interface in Galaxy Australia. Could you please provide guidance or direct me to the relevant resources? --- ## [JupyterLab shutdown after 24 hours of run.](https://help.galaxyproject.org/t/jupyterlab-shutdown-after-24-hours-of-run/13238)
**Author:** [@heisrepeatedlysaying](https://help.galaxyproject.org/u/heisrepeatedlysaying)\ **Replies:** 4\ **Last updated:** [August 19, 2024, 2:15am UTC](https://help.galaxyproject.org/t/jupyterlab-shutdown-after-24-hours-of-run/13238 "2024-08-19T02:15:11Z")
In description it was written 30days will run an interactive tool, In my side jupyter lab stopped after 24hours without finishing job. Is there any notebook to run 30days? --- ## [JupyTool IS NOT WORKING](https://help.galaxyproject.org/t/jupytool-is-not-working/12324)
**Author:** [@David\_Olivares\_Osuna](https://help.galaxyproject.org/u/David_Olivares_Osuna)\ **Replies:** 1\ **Last updated:** [April 26, 2024, 10:22pm UTC](https://help.galaxyproject.org/t/jupytool-is-not-working/12324 "2024-04-26T22:22:36Z")
I’ve tried to start Jupyter Notebook from Galaxy using the JupyTool, but the job remains in a waiting state (gray color) indefinitely. Does anyone have any information about this? --- ## [how to run custom python and matlab scripts](https://help.galaxyproject.org/t/how-to-run-custom-python-and-matlab-scripts/11826)
**Author:** [@Eric2282](https://help.galaxyproject.org/u/Eric2282)\ **Replies:** 2\ **Last updated:** [March 5, 2024, 3:11pm UTC](https://help.galaxyproject.org/t/how-to-run-custom-python-and-matlab-scripts/11826 "2024-03-05T15:11:00Z")
I tried to reanalyze some published data. Fastq files were pre-processed using custom python scripts. Custom Matlab scripts were used to analzye sequence size and distribution. I am beginner in NGS data analysis and the… --- ## [Jupyter notebook queues endlessly without ever starting](https://help.galaxyproject.org/t/jupyter-notebook-queues-endlessly-without-ever-starting/10227)
**Author:** [@nhp123](https://help.galaxyproject.org/u/nhp123)\ **Replies:** 4\ **Last updated:** [July 3, 2023, 9:36pm UTC](https://help.galaxyproject.org/t/jupyter-notebook-queues-endlessly-without-ever-starting/10227 "2023-07-03T21:36:11Z")
Hi all, It seems that on usegalaxy.org, when I try to start up a Jupyter notebook the job never begins. I queued it yesterday and it still has not started today, almost 24 hours later. Is there any way I could get help … --- ## [Interactive Tools -- Job does not run](https://help.galaxyproject.org/t/interactive-tools-job-does-not-run/8298)
**Author:** [@Trevor\_Millar](https://help.galaxyproject.org/u/Trevor_Millar)\ **Replies:** 1\ **Last updated:** [July 8, 2022, 2:43pm UTC](https://help.galaxyproject.org/t/interactive-tools-job-does-not-run/8298 "2022-07-08T14:43:07Z")
Hello, I have been trying to get a jupyter notebook running with Interactive Jupyter Notebook (Galaxy Version 0.3) to no avail. The job gets put onto my history, but never executes, and I can not find anything under my ‘… --- ## [Interactive tool error](https://help.galaxyproject.org/t/interactive-tool-error/5547)
**Author:** [@shruthi\_6](https://help.galaxyproject.org/u/shruthi_6)\ **Replies:** 0\ **Last updated:** [March 8, 2021, 6:40am UTC](https://help.galaxyproject.org/t/interactive-tool-error/5547 "2021-03-08T06:40:23Z")
Hello, I am unable to use the interactive tools in galaxy.Both Jupyter notebook and Rstudio. The following error is coming!!! Kindly Help . --- ## [Interactive Jupyter Notebook doesn't add to my history.](https://help.galaxyproject.org/t/interactive-jupyter-notebook-doesnt-add-to-my-history/5428)
**Author:** [@Rihana](https://help.galaxyproject.org/u/Rihana)\ **Replies:** 3\ **Last updated:** [February 23, 2021, 10:40am UTC](https://help.galaxyproject.org/t/interactive-jupyter-notebook-doesnt-add-to-my-history/5428 "2021-02-23T10:40:25Z")
Hi everyone, I selected “Interactive Jupyter Notebook” from Tools on the left side bar to include it to my Galaxy interactive tools,but it isn’t added to my history.The job is constantly running and taking so long. I d… --- ## [Jupyter Interactive Tool Stopped- how to get it to run again](https://help.galaxyproject.org/t/jupyter-interactive-tool-stopped-how-to-get-it-to-run-again/4214)
**Author:** [@eringregory](https://help.galaxyproject.org/u/eringregory)\ **Replies:** 3\ **Last updated:** [July 31, 2020, 11:02pm UTC](https://help.galaxyproject.org/t/jupyter-interactive-tool-stopped-how-to-get-it-to-run-again/4214 "2020-07-31T23:02:41Z")
Question: I am trying to open the Jupyter Interactive tool, but the Job info says the process is stopped when my history says its running, and it wont allow me to access the JupyterLab notebook. Ideas? --- ## [Jupyter Notebooks](https://help.galaxyproject.org/t/jupyter-notebooks/523)
**Author:** [@Alexander\_Garcia\_Cas](https://help.galaxyproject.org/u/Alexander_Garcia_Cas)\ **Replies:** 1\ **Last updated:** [January 28, 2019, 4:40pm UTC](https://help.galaxyproject.org/t/jupyter-notebooks/523 "2019-01-28T16:40:24Z")
I would like to know if there is a way to publish galaxy workflows as jupyter notebooks.