|
Error in generating bigwig file after running macs2
|
|
4
|
11
|
July 11, 2025
|
|
cut and run: MACS2 error
|
|
7
|
22
|
July 9, 2025
|
|
MACS2 cutoff analysis
|
|
1
|
11
|
July 2, 2025
|
|
Cut&Run TF Analysis - Very Low Peak Counts Despite Good Library Quality
|
|
2
|
12
|
May 28, 2025
|
|
MACS2 bdgcmp troubleshooting
|
|
4
|
54
|
August 28, 2024
|
|
ChIPseeker missing first peak in the interval file?
|
|
2
|
243
|
January 10, 2024
|
|
bedgraph-to-bigwig error
|
|
3
|
424
|
November 14, 2023
|
|
The plotHeatmap (DeepTool) does not produce the desired heatmap/ ChIP-seq analysis (H3K4me3)
|
|
4
|
639
|
October 27, 2023
|
|
Rfile throwing error
|
|
1
|
209
|
October 20, 2023
|
|
Help with making peaks MACS Chip-sequence analysis
|
|
1
|
396
|
October 2, 2023
|
|
CHM13 T2T genome not found in options for some tools
|
|
10
|
972
|
July 20, 2023
|
|
Score column in narrowPeak file?
|
|
2
|
1251
|
May 10, 2023
|
|
How to arrange samples for Diffbind analysis
|
|
6
|
1566
|
May 4, 2023
|
|
Chip-seq biological replicates, multiple timepoints
|
|
1
|
375
|
April 13, 2023
|
|
MACS2 peak calling, there is not a explicit input control
|
|
2
|
729
|
November 28, 2022
|
|
MACS2 scientific result troubleshooting
|
|
6
|
857
|
June 16, 2022
|
|
MACS2 narrowpeaks results are empty when adding an input
|
|
2
|
568
|
June 16, 2022
|
|
MACS2 gives no error but I am getting zero peaks as well…problem or not a problem?
|
|
4
|
1180
|
June 15, 2022
|
|
usegalaxy.org IGV connection issue
|
|
4
|
482
|
June 1, 2022
|
|
Fatal error in chip seeker
|
|
1
|
401
|
May 17, 2022
|
|
Tool for merging 2x single-read illumina sequencing files (fastq) into one?
|
|
7
|
661
|
November 5, 2021
|
|
We did our analysis using edgeR and we got many gene but when we used Diffbind we got less no of chromosome regions ?
|
|
1
|
718
|
September 13, 2021
|
|
What are the Parameters for using DiffBind for analysing ATAC-seq in usegalaxy.org
|
|
2
|
613
|
September 11, 2021
|
|
DiffBind Chip-Seq error
|
|
5
|
1303
|
July 15, 2021
|
|
Diffbind error: Not enough y observations
|
|
3
|
1411
|
May 28, 2021
|
|
Error in MACS2 paired end peakcalling
|
|
0
|
553
|
March 24, 2021
|
|
No difference in peaks between ChIP sample and control / Bad background noise on control for ChIP-Seq / Weak enrichment for ChIP-Seq
|
|
0
|
640
|
July 10, 2020
|
|
Uploading Annotation File to History
|
|
0
|
450
|
April 14, 2020
|
|
Error encountered during peak calling using MACS2 callpeak
|
|
0
|
453
|
April 12, 2020
|
|
ChIP seerker misannotating features
|
|
0
|
310
|
April 11, 2020
|