Topics tagged mapping

Topic	Replies	Views	Activity
how to get the MadLandDB mentioned in this tutorial? gtn-tutorial , mapping , blast , makeblastdb	4	297	November 11, 2024
Interproscan format issues usegalaxy.eu support troubleshooting , mapping , tool-help	3	21	November 7, 2024
hisat2 and featurecounts usegalaxy.org support gtn-tutorial , workflow , galaxy-local , mapping , transcriptomics , featurecounts	23	1946	October 28, 2024
Cant get bowtie to work mapping	2	13	October 25, 2024
jobs running too slow usegalaxy.org support mapping , transcriptomics	2	18	October 25, 2024
HISAT2 output error mapping , tool-help , hisat2	3	40	October 21, 2024
Discard parts of sequence not mapped to reference usegalaxy.org support mapping , single-cell	2	15	October 18, 2024
Variant calling with VarScan on WGS data usegalaxy.org support workflow , mapping , tool-help , variant-analysis , varscan	5	30	October 12, 2024
NCBI BLAST+ blastx custom-genome , mapping , tool-help , ncbi_blastx_wrapper	1	15	October 10, 2024
Can users increase the number of threads used for jobs? usegalaxy.eu support mapping	1	17	October 10, 2024
Searching one large sequence for a smaller sequence usegalaxy.org support troubleshooting , mapping , blast , ncbi_blastn_wrapper	1	7	September 30, 2024
Question about Minimap2 and nanopore reads mapping , single-cell	1	19	September 17, 2024
Map with BWA-MEM problem - An error occurred with this dataset: bam format mapping , bwa-mem	3	22	September 17, 2024
Need Help with Mapping Genome Skimming Data and Generating Consensus Sequences in Galaxy usegalaxy.eu support mapping , tool-help	1	11	September 16, 2024
Optimizing STAR Mapping for Large-Scale Genome Annotation: Managing Memory Overflows in RNA-Seq Workflows workflow , reference-index , galaxy-local , mapping , transcriptomics	6	30	September 10, 2024
I am using HISAT2, but my reference genome Rickettsia rickettsii is missing in the dropdown list. custom-genome , mapping , custom-build	15	46	August 23, 2024
Please run Megablast as an option with BLASTN usegalaxy.eu support mapping , blast , tool-help , ncbi_blastn_wrapper , megablast_wrapper	8	42	August 18, 2024
DeepVariant low quality sorting mapping , tool-help , variant-analysis	1	28	July 31, 2024
The accuracy of re-blasting known sequences of human gut microbes is very low usegalaxy.org support gtn-tutorial , mapping	1	5	July 29, 2024
DIAMOND --all option not working usegalaxy.eu support mapping	3	113	July 22, 2024
RNA alignment not detecting indels mapping , transcriptomics	5	89	June 17, 2024
"`CXXABI_1.3.13' not found" when running Salmon usegalaxy.be support mapping , transcriptomics	1	94	June 14, 2024
Multiple files after demultiplexing using radtags - what files do I use for mapping/SNP calling etc.,? usegalaxy.eu support mapping , stacks , collections	1	117	June 6, 2024
Bowtie2: how to normalize reads by spike in mapping	1	114	May 24, 2024
RNA STAR length of the genomic sequence around annotated junctions usegalaxy.org.au support mapping	2	95	May 2, 2024
Blastn issue; what is the alternative tool? mapping , transcriptomics	4	193	April 25, 2024
NCBI BLAST+ rpstblastn mapping , blast , tool-help	2	124	April 25, 2024
Bowtie2 and BWA aligners usegalaxy.eu support mapping	7	289	March 22, 2024
Too many duplicated sequences OR unassigned because of mapping quality troubleshooting , mapping , transcriptomics , tool-help , featurecounts	2	1167	March 20, 2024
HISAT2 crash/failure usegalaxy.org support custom-genome , troubleshooting , mapping , exceeds-memory-error	7	1318	March 20, 2024