Topics tagged mapping

Topic	Replies	Views	Activity
Request: Add host-decontamination tool (KneadData) or a comparable tool on Galaxy.eu for human shotgun metagenomics preprocessing usegalaxy.eu support workflow , mapping , tool-request	2	26	November 6, 2025
BAM/SAM Mapping Stats mapping , transcriptomics , tool-help , rseqc_bam_stat	1	14	November 3, 2025
Minimap2 accepted formats usegalaxy.eu support mapping , datatype-validation , datatype	1	11	November 3, 2025
Troubleshooting for an error in Galaxy Training Materials "reference based RNA seq data analysis" usegalaxy.org.au support mapping	1	23	October 29, 2025
Bismark mapping with Fatal Error exit usegalaxy.eu support mapping , epigenetics	2	14	October 16, 2025
BWA MEM2 tool troubleshooting mapping , bwa_mem2	5	36	October 8, 2025
blastp against nr database database , mapping , blast , blastp	8	3688	October 4, 2025
Bowtie2 on galaxy europe platform does not work mapping	5	55	October 3, 2025
Assembly statistics in reference based RNA seq analysis_tools Resources assembly , mapping , transcriptomics , resources , rna-seq , deseq2 , stringtie , rnaspades	1	265	September 6, 2023
BAM index, fasta indexes, display applications, custom genome builds, IGV Resources custom-genome , mapping , igv , custom-build , resources	3	56	September 22, 2025
RNASTAR tool - Stuck for days usegalaxy.org support mapping , queued-gray-datasets	4	23	September 9, 2025
Running MiRDeep2 with pooled reads from MiRDeep2 Mapper troubleshooting , mapping , mirna , rbc_mirdeep2	4	23	August 28, 2025
Asking for unmapped genes in RNA sequencing via Galaxy troubleshooting , mapping , transcriptomics , resources , rna_star	1	11	August 25, 2025
Mapping against a WGS reference usegalaxy.eu support custom-genome , mapping	3	25	July 1, 2025
Bacterial genome sequence analysis usegalaxy.org support mapping , blast , makeblastdb , tool-help , ncbi_tblastn_wrapper	1	10	June 12, 2025
Data Base not found for Cyanobactria usegalaxy.org support server-admin , galaxy-local , mapping , queued-gray-datasets , tool-help	1	5	May 29, 2025
Help with Samtools gtn-tutorial , mapping , samtools	2	16	May 15, 2025
Large discrepancies between processing identical files on Org vs EU site usegalaxy.eu support workflow , upload , mapping , fastqgz	6	53	May 13, 2025
Bowtie2 Mapping Issues usegalaxy.org support mapping	5	54	May 7, 2025
BBmap Host Removal Problems mapping	4	50	April 10, 2025
Ensembl gene annotation gtf for rat problem with RNA STAR Resources troubleshooting , mapping , reference-annotation , reference-genome , resources	2	90	February 26, 2025
UCSC Reference Genome and GTF Fatal Error no valid exons in the GTF file usegalaxy.eu support custom-genome , mapping , fastq-format-error , ucsc , rna-seq , featurecounts , fastq-format , rna_star	3	135	January 22, 2025
Possible to map reads against multiple separate references at once? usegalaxy.org support mapping	2	27	January 15, 2025
Determining Primary, Intermediate, and Mature Mitochondrial Transcripts?? usegalaxy.org support workflow , mapping , transcriptomics , single-cell	1	8	December 9, 2024
IGV Download Problem usegalaxy.org support gtn-tutorial , mapping , igv	3	38	December 5, 2024
RNAstar Select Reference Genome - Species Not Available - contact the Galaxy team (--genomeDir) usegalaxy.eu support custom-genome , mapping , reference-annotation , reference-genome , custom-build , reference-transcriptome	1	28	December 4, 2024
Galaxy & Kubernetes mapping	7	81	November 28, 2024
Map with minimap2, no secondary alignment mapping , tool-help , minimap2	1	148	November 26, 2024
Bowtie2 reference genome of Goat (Capra Hircus) usegalaxy.org support reference-index , custom-genome , mapping , reference-annotation , reference-genome , custom-build , tool-help , reference-transcriptome , bowtie2	1	17	November 25, 2024
how to get the MadLandDB mentioned in this tutorial? gtn-tutorial , mapping , blast , makeblastdb	4	309	November 11, 2024