Topics tagged mapping

Topic	Replies	Views	Activity
Help with Samtools gtn-tutorial , mapping , samtools	2	92	May 15, 2025
Large discrepancies between processing identical files on Org vs EU site usegalaxy.eu support workflow , upload , mapping , fastqgz , collections , collection-shape	4	126	April 24, 2025
Bowtie2 Mapping Issues usegalaxy.org support mapping	5	128	May 7, 2025
BBmap Host Removal Problems mapping	4	110	April 10, 2025
Ensembl gene annotation gtf for rat problem with RNA STAR Resources troubleshooting , mapping , reference-annotation , reference-genome , resources	2	172	February 26, 2025
UCSC Reference Genome and GTF Fatal Error no valid exons in the GTF file usegalaxy.eu support custom-genome , mapping , fastq-format-error , ucsc , rna-seq , featurecounts , fastq-format , rna_star	3	263	January 22, 2025
Possible to map reads against multiple separate references at once? usegalaxy.org support mapping	2	66	January 15, 2025
Determining Primary, Intermediate, and Mature Mitochondrial Transcripts?? usegalaxy.org support workflow , mapping , transcriptomics , single-cell	1	42	December 9, 2024
IGV Download Problem usegalaxy.org support gtn-tutorial , mapping , igv	2	106	December 5, 2024
RNAstar genome not available? Use a custom reference genome! usegalaxy.eu support custom-genome , mapping , reference-genome , tool-help , rna_star	1	85	December 4, 2024
Galaxy & Kubernetes mapping	7	174	November 28, 2024
Map with minimap2, no secondary alignment mapping , tool-help , minimap2	1	285	November 26, 2024
Bowtie2 reference genome of Goat (Capra Hircus) usegalaxy.org support reference-index , custom-genome , mapping , reference-annotation , reference-genome , custom-build , tool-help , reference-transcriptome , bowtie2	1	60	November 25, 2024
how to get the MadLandDB mentioned in this tutorial? gtn-tutorial , mapping , blast , makeblastdb	2	349	July 31, 2023
Interproscan format issues usegalaxy.eu support troubleshooting , mapping , tool-help , interproscan	3	145	November 7, 2024
Hisat2 and featurecounts usegalaxy.org support gtn-tutorial , workflow , mapping , transcriptomics , featurecounts	23	2437	October 28, 2024
Cant get bowtie to work mapping	2	63	October 25, 2024
jobs running too slow usegalaxy.org support mapping , transcriptomics	2	81	October 25, 2024
HISAT2 output error mapping , tool-help , hisat2	3	250	October 21, 2024
Variant calling with VarScan on WGS data usegalaxy.org support workflow , mapping , tool-help , variant-analysis , varscan	5	167	October 12, 2024
NCBI BLAST+ blastx custom-genome , mapping , tool-help , ncbi_blastx_wrapper	1	52	October 10, 2024
Can users increase the number of threads used for jobs? usegalaxy.eu support mapping	1	90	October 10, 2024
Searching one large sequence for a smaller sequence usegalaxy.org support troubleshooting , mapping , blast , ncbi_blastn_wrapper	1	41	September 30, 2024
Question about Minimap2 and nanopore reads mapping , single-cell	1	131	September 17, 2024
Map with BWA-MEM problem - An error occurred with this dataset: bam format mapping , bwa-mem	3	262	September 17, 2024
Need Help with Mapping Genome Skimming Data and Generating Consensus Sequences in Galaxy Resources mapping , tool-help	1	96	September 16, 2024
Optimizing STAR Mapping for Large-Scale Genome Annotation: Managing Memory Overflows in RNA-Seq Workflows workflow , reference-index , galaxy-local , mapping , transcriptomics , exceeds-memory-error	6	161	September 10, 2024
I am using HISAT2, but my reference genome Rickettsia rickettsii is missing in the dropdown list. custom-genome , mapping , custom-build	13	210	July 20, 2024
Please run Megablast as an option with BLASTN usegalaxy.eu support mapping , blast , tool-help , ncbi_blastn_wrapper , megablast_wrapper	8	275	August 18, 2024
DeepVariant low quality sorting mapping , igv , tool-help , variant-analysis	1	138	July 31, 2024