Topics tagged mapping

Topic	Replies	Views	Activity
Optimizing STAR Mapping for Large-Scale Genome Annotation: Managing Memory Overflows in RNA-Seq Workflows workflow , reference-index , galaxy-local , mapping , transcriptomics , exceeds-memory-error	6	47	September 10, 2024
I am using HISAT2, but my reference genome Rickettsia rickettsii is missing in the dropdown list. custom-genome , mapping , custom-build	15	63	August 23, 2024
Please run Megablast as an option with BLASTN usegalaxy.eu support mapping , blast , tool-help , ncbi_blastn_wrapper , megablast_wrapper	8	124	August 18, 2024
DeepVariant low quality sorting mapping , igv , tool-help , variant-analysis	1	62	July 31, 2024
The accuracy of re-blasting known sequences of human gut microbes is very low usegalaxy.org support gtn-tutorial , mapping	1	5	July 29, 2024
DIAMOND --all option not working usegalaxy.eu support mapping	3	120	July 22, 2024
RNA alignment not detecting indels mapping , transcriptomics , igv	5	100	June 17, 2024
"`CXXABI_1.3.13' not found" when running Salmon usegalaxy.be support mapping , transcriptomics , salmon	1	144	June 14, 2024
Multiple files after demultiplexing using radtags - what files do I use for mapping/SNP calling etc.,? usegalaxy.eu support mapping , stacks , collections	1	160	June 6, 2024
Bowtie2: how to normalize reads by spike in mapping	1	141	May 24, 2024
RNA STAR length of the genomic sequence around annotated junctions usegalaxy.org.au support mapping	2	138	May 2, 2024
Blastn issue; what is the alternative tool? mapping , transcriptomics	4	217	April 25, 2024
NCBI BLAST+ rpstblastn mapping , blast , tool-help	2	129	April 25, 2024
Bowtie2 and BWA aligners usegalaxy.eu support mapping	7	529	March 22, 2024
Too many duplicated sequences OR unassigned because of mapping quality troubleshooting , mapping , transcriptomics , tool-help , featurecounts	2	1811	March 20, 2024
HISAT2 crash/failure usegalaxy.org support custom-genome , troubleshooting , mapping , exceeds-memory-error	7	1488	March 20, 2024
HISAT2 job killed due to not enough memory allocated for the job usegalaxy.org support mapping , exceeds-memory-error	5	642	March 19, 2024
Diamond troubleshooting troubleshooting , mapping	7	255	February 9, 2024
Mapping with STAR Error usegalaxy.org support troubleshooting , mapping	5	295	January 26, 2024
RNA STAR stuck on running usegalaxy.org support mapping , queued-gray-datasets	2	230	December 23, 2023
Je-Demultiplex outputs not working in alignment stage usegalaxy.org support mapping , quality-control	1	295	December 21, 2023
Galaxy Docker - Error for all but 2 parallel jobs server-admin , mapping , galaxy-docker	1	301	December 21, 2023
HiSat reference genomce seq.fasta GRCh38 does not work and HiSat2 does not accept other ref.seq.fasta usegalaxy.org support custom-genome , mapping	1	461	December 21, 2023
Resolved: Tools are missing in my account usegalaxy.org (main server) usegalaxy.org support mapping , transcriptomics , server-status , featurecounts	7	573	December 15, 2023
Filter reference/subject sequences based on mapping usegalaxy.eu support text-manipulation , mapping , blast	3	203	December 12, 2023
Time for Running RNA Seq Workflow usegalaxy.org support mapping , transcriptomics , queued-gray-datasets , deseq2 , stringtie	1	301	December 1, 2023
BBtools: BBmap aligned usegalaxy.org support mapping	2	195	November 30, 2023
Testing Pulsar (GTN archive 2023-11-01) errors mapping , pulsar	1	220	November 29, 2023
There are no locally cached or built-in genomes on use.galaxy.org usegalaxy.org support mapping , reference-genome , bwa_mem2	1	248	November 29, 2023
why does computematrix programe run so long? usegalaxy.org support mapping , queued-gray-datasets , evolution	4	334	November 16, 2023