|
HISAT2 error: fewer reads in file specified with -2 than in file specified with -1
|
|
3
|
32
|
December 6, 2021
|
|
Bowtie2 mapping rate low
|
|
1
|
51
|
November 9, 2021
|
|
Filtering out non-target organism reads before assembly
|
|
1
|
50
|
November 1, 2021
|
|
job paused and data not working?
|
|
1
|
138
|
September 20, 2021
|
|
RNA STAR error on trimmomtaic files
|
|
7
|
121
|
September 14, 2021
|
|
More than 1 week job waits for RNA STAR
|
|
9
|
208
|
August 17, 2021
|
|
Setting cutoff for blast with low evalue
|
|
5
|
101
|
August 13, 2021
|
|
HISAT2 alignment results in very low in number of mapped reads
|
|
7
|
268
|
August 7, 2021
|
|
Protein sequences alignment
|
|
5
|
152
|
July 15, 2021
|
|
hisat2 low overall aligment rate
|
|
2
|
94
|
May 27, 2021
|
|
Aligning Illumina RNAseq to SARS-CoV2 genome
|
|
2
|
161
|
April 26, 2021
|
|
Bowtie2 alignments on duplicated genes
|
|
3
|
125
|
April 15, 2021
|
|
fastqsanger.gz file not recognized in usegalaxy.org
|
|
11
|
1005
|
February 25, 2021
|
|
HISAT2 reports samples with 0% alignment rates
|
|
3
|
160
|
February 5, 2021
|
|
Confirm bwa-mem mapping
|
|
4
|
170
|
January 21, 2021
|
|
Tophat vs HISAT2
|
|
2
|
247
|
January 11, 2021
|
|
Identification of Cre-recombinase in ScRNAseq data
|
|
3
|
204
|
January 2, 2021
|
|
How can I find that a RNAseq data is stranded or un-stranded by usegalaxy tools?
|
|
3
|
351
|
November 17, 2020
|
|
Running Diamond against NCBI's NR database
|
|
5
|
1223
|
September 4, 2020
|
|
BWA-MEM not working
|
|
2
|
366
|
August 13, 2020
|
|
Problem processing Paired end collections with MiniMap2
|
|
11
|
750
|
July 2, 2020
|
|
Easiest steps to recover unmapped reads from mapping?
|
|
0
|
185
|
May 27, 2020
|
|
Data paused and keep getting error: Tophat RNA data -- Tophat/Tophat2 Deprecated, use HISAT2
|
|
1
|
271
|
May 8, 2020
|
|
RNA STAR not allowing genome index choice
|
|
1
|
339
|
April 13, 2020
|
|
Tophat not working??? - Deprecated tool, use HISAT2 instead
|
|
6
|
409
|
February 29, 2020
|
|
Using Bowtie Not Bowtie2
|
|
1
|
196
|
January 29, 2020
|
|
bowtie2 not working
|
|
25
|
1507
|
October 10, 2019
|
|
HISAT2 Not working
|
|
10
|
950
|
October 10, 2019
|
|
Issue with Tutorial: De novo transcriptome reconstruction with RNA-Seq - HISAT2 mapping failures
|
|
5
|
380
|
October 4, 2019
|
|
bowtie2 problem
|
|
1
|
267
|
August 26, 2019
|
