Topics tagged ncbi

Topic	Replies	Views	Activity
DESeq2 Returning Nucleotides As Gene ID usegalaxy.org support ncbi , deseq2 , unexpected-result	4	194	October 26, 2022
ERROR: No such file or directory when I am using SRR number from NCBI ncbi , input , public-galaxy-server	3	233	October 7, 2022
"Faster Download and Extract Reads in FASTA/Q" output is green but without data usegalaxy.org support ncbi , sra	1	256	September 8, 2022
SRR dataset not available: Connection drops from NCBI using fastq_dump -- try Upload by URL instead usegalaxy.org support ncbi , upload-by-url	1	297	November 2, 2021
Failing to load single-cell raw fastq files into Galaxy usegalaxy.org support fastq , ncbi , upload-by-url	1	382	September 20, 2021
Incomplete uploading from ENA's EBI SRA -- Solution: try NCBI SRA instead usegalaxy.eu support upload , ncbi , get-data	2	508	July 2, 2021
Fatal error in galaxy program: Problems retrieving SRA data from NCBI usegalaxy.org support ncbi , sra	4	963	April 15, 2021
Running large-scale jobs with "Faster Download and Extract Reads in FASTQ " usegalaxy.eu support ncbi , sra	1	701	April 6, 2021
fastqsanger.gz file not recognized in usegalaxy.org usegalaxy.org support dataset-collection , fastq , ncbi , mapping , fastqsangergz	11	2206	February 25, 2021
Empty collections resulting from NCBI SRA tool with accession list input usegalaxy.org support ncbi , sra	5	439	January 26, 2021
help with extract reads from srr accession dataset-collection , ncbi , fastq-deinterlacer	4	1104	April 8, 2020
fasta to fastq; fastsanger.gz to fastq; SRA to fastq fastq , ncbi , sra , fastqsangergz , fastqsanger	3	3169	February 11, 2020
Difficulty in getting SRA into Galalxy usegalaxy.org support bam , fastq , ncbi , fastqsangergz , fastqsanger	6	1735	December 18, 2019
Download and Extract Reads in FASTA/Q -- times out at NCBI usegalaxy.org support ncbi , get-data	1	511	October 24, 2019
Error with "Download and Extract Reads in FASTA/Q format from NCBI SRA" usegalaxy.org support ncbi , sra , get-data	4	1674	September 23, 2019
How long does it take to create single-end and pair-end data (fastq-dump) from SRAs? usegalaxy.org support ncbi , get-data	3	1269	September 11, 2019
Unexpected result from tool Fastq Splitter usegalaxy.org support fastq , ncbi , fastq-splitter , fastq-deinterlacer	5	1002	February 26, 2019
SRA file and run fastq-dump error on local Galaxy admin , tool-install , fastq , ncbi , sra	4	1101	December 12, 2018