Topics tagged ncbi

Topic	Replies	Views	Activity
Error using tool "Download and Extract Reads in FASTQ format from NCBI SRA" usegalaxy.org support ncbi , sra , server-open-issue	1	146	April 11, 2024
NCBI+ blastp and GALAXY_SLOTS - increase number of threads server-admin , ncbi , galaxy-local , blast , blastp	3	508	December 19, 2023
DESeq2 Returning Nucleotides As Gene ID usegalaxy.org support ncbi	5	500	July 22, 2025
"Faster Download and Extract Reads in FASTA/Q" output is green but without data usegalaxy.org support ncbi , sra	1	641	September 8, 2022
Incomplete uploading from ENA's EBI SRA -- Solution: try NCBI SRA instead usegalaxy.eu support upload , ncbi , get-data	2	780	July 2, 2021
Fatal error in galaxy program: Problems retrieving SRA data from NCBI usegalaxy.org support ncbi , sra	4	1243	April 15, 2021
Running large-scale jobs with "Faster Download and Extract Reads in FASTQ " usegalaxy.eu support ncbi , sra	1	981	April 6, 2021
fastqsanger.gz file not recognized in usegalaxy.org usegalaxy.org support ncbi , mapping , fastqsanger , quality-control	11	3202	February 25, 2021
Empty collections resulting from NCBI SRA tool with accession list input usegalaxy.org support ncbi , sra	5	694	January 26, 2021
help with extract reads from srr accession ncbi , fastq-deinterlacer	4	1587	April 8, 2020
fasta to fastq; fastsanger.gz to fastq; SRA to fastq ncbi , sra , fastqsanger , quality-control	3	5743	February 11, 2020
Difficulty in getting SRA into Galalxy usegalaxy.org support ncbi , mapping , fastqsanger , quality-control	6	2010	December 18, 2019
Download and Extract Reads in FASTA/Q -- times out at NCBI usegalaxy.org support ncbi , get-data	1	809	October 24, 2019
Error with "Download and Extract Reads in FASTA/Q format from NCBI SRA" usegalaxy.org support ncbi , sra , get-data	4	2316	September 23, 2019
How long does it take to create single-end and pair-end data (fastq-dump) from SRAs? usegalaxy.org support ncbi , get-data	3	1814	September 11, 2019
Unexpected result from tool Fastq Splitter usegalaxy.org support ncbi , fastq-splitter , fastq-deinterlacer	5	1269	February 26, 2019
SRA file and run fastq-dump error on local Galaxy server-admin , tool-install , ncbi , sra	4	1583	December 12, 2018