Topics tagged reference-annotation

Topic	Replies	Views	Activity
Getting NCBI Reference genome indexed for tools: custom genome, reference genome, reference annotation reference-index , custom-genome , reference-annotation , reference-genome , featurecounts , reference-transcriptome	10	40	March 14, 2025
Ensembl gene annotation gtf for rat problem with RNA STAR usegalaxy.org support troubleshooting , mapping , reference-annotation , reference-genome , resources	2	19	February 26, 2025
Request to upload/add new version of reference genome of Aedes albopictus (Genome assembly AalbF5) usegalaxy.org support reference-index , custom-genome , reference-annotation , reference-genome , reference-transcriptome	1	14	February 19, 2025
Custom reference genome annotation usegalaxy.org support custom-genome , reference-annotation , reference-genome	6	1080	February 14, 2025
How to select a different reference genome from that already present using the tool RNA-STAR usegalaxy.org support custom-genome , reference-annotation , reference-genome , custom-build , rna_star	2	13	February 10, 2025
FEELnc troubleshooting troubleshooting , reference-annotation , lncrna	5	159	February 10, 2025
I can not get counts transcriptomics , reference-annotation , reference-genome , rna_star	5	12	January 31, 2025
Feature count on exon level instead gene level usegalaxy.eu support transcriptomics , reference-annotation , rna-seq , featurecounts	3	35	January 28, 2025
How to get galaxy to call transcript types from gene symbols? usegalaxy.org.au support text-manipulation , transcriptomics , reference-annotation	1	15	January 15, 2025
Built-in reference genome of domestic water buffalo usegalaxy.org.au support reference-index , reference-annotation , reference-genome	1	16	January 6, 2025
RNAstar Select Reference Genome - Species Not Available - contact the Galaxy team (--genomeDir) usegalaxy.eu support custom-genome , mapping , reference-annotation , reference-genome , custom-build , reference-transcriptome	1	15	December 4, 2024
Bowtie2 reference genome of Goat (Capra Hircus) usegalaxy.org support reference-index , custom-genome , mapping , reference-annotation , reference-genome , custom-build , tool-help , reference-transcriptome , bowtie2	1	14	November 25, 2024
Reference annotation for TAIR10 reference-index , reference-annotation , reference-genome , reference-transcriptome	1	57	November 6, 2024
Gene ID's being filtered out in ChipSeq analysis usegalaxy.org.au support chip-seq , data-manipulation , reference-annotation , tool-help , get_flanks1	5	22	November 4, 2024
Feature counts built-in annotation file - no options available transcriptomics , reference-annotation , tool-help , featurecounts	2	98	October 28, 2024
Inquiry about lettuce genome Resources reference-index , custom-genome , reference-annotation , reference-genome , custom-build , resources	2	41	October 7, 2024
How can i use SILVA_138.2 latets as a reference to align.seqs tool in GALAXY Server? usegalaxy.eu support gtn-tutorial , galaxy-local , metagenomics , reference-annotation , tool-help	2	24	October 4, 2024
Genes from my reference genome are not annotated in output files. Trying to get read count per gene/abundant gene list usegalaxy.org support troubleshooting , reference-annotation , rna-seq	1	20	October 1, 2024
Train Augustus doesn't work usegalaxy.org.au support troubleshooting , reference-annotation , reference-genome	7	172	September 10, 2024
What is the meaning of Reference Gene Model in FPKM Tools in Galaxy? bed , reference-annotation , rseqc_fpkm_count	1	58	August 6, 2024
Why does my GTF file not convert into a BED12 file with the GTF to BED12 converter tool? reference-annotation	1	69	July 24, 2024
Generating a New GFF file from a previously merged Stringtie File reference-annotation , genome-annotation	1	30	July 5, 2024
Where to get human reference annotation in gff3 or gtf format? reference-annotation , salmon	2	205	June 27, 2024
Obtain annotation file for mouse genome for ATAC-seq usegalaxy.org support reference-annotation	1	87	June 6, 2024
Correct reference transcriptome for Salmon quant on existing RNASTAR alignments usegalaxy.org support troubleshooting , reference-annotation , reference-genome , resources , reference-transcriptome , salmon	3	431	May 16, 2024
RNA Star: Can I generate a temporary index with files from previous assemblies? reference-annotation , reference-genome	2	124	May 13, 2024
RNA STAR quantimode count difference between run on galaxy and on self linux server reference-annotation , reference-genome	4	104	May 7, 2024
Error Using human hg38 in Reference-based RNA-Seq data analysis transcriptomics , reference-annotation , reference-genome	2	222	April 29, 2024
about tutorial files and their sources gtn-tutorial , reference-index , sra , reference-annotation , reference-genome , __apply_rules__	8	215	April 26, 2024
Adding genome reference? usegalaxy.org support reference-index , custom-genome , reference-annotation , reference-genome	2	214	April 23, 2024