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What is the meaning of Reference Gene Model in FPKM Tools in Galaxy?
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1
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158
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August 6, 2024
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Human genome GCF_000001405 and variations
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1
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220
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July 24, 2024
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Generating a New GFF file from a previously merged Stringtie File
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1
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64
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July 5, 2024
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Where to get human reference annotation in gff3 or gtf format?
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2
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424
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June 27, 2024
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Obtain annotation file for mouse genome for ATAC-seq
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1
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120
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June 6, 2024
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RNA Star: Can I generate a temporary index with files from previous assemblies?
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2
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163
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May 13, 2024
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RNA STAR quantimode count difference between run on galaxy and on self linux server
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4
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135
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May 7, 2024
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Error Using human hg38 in Reference-based RNA-Seq data analysis
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2
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342
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April 29, 2024
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about tutorial files and their sources
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9
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263
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April 7, 2026
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Adding genome reference?
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2
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247
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April 23, 2024
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sRNAPipe query for input fasta files
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1
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148
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March 28, 2024
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Mstrg convertion into gene symbol. Is this possible?
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2
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452
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July 22, 2025
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hg38 patch 11 fa.gz error
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1
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274
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January 31, 2024
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UCSC main table browser regarding
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1
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125
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January 30, 2024
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How to use a gtf file from ensemble?
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1
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249
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January 16, 2024
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Regarding SNP eff
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2
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195
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January 17, 2024
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Reference transcriptome
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3
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157
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January 16, 2024
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Map reads to KEGG/GO/funct.profile
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2
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169
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January 9, 2024
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Glimmer3 results failed to convert to GFF3 - claiming a Metadata Error
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1
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568
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December 21, 2023
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create gff file with eggnog_mapper
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1
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473
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December 21, 2023
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Mapping Leishmania transcript using RNA STAR
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1
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267
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December 12, 2023
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Human Reference genome
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2
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293
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November 28, 2023
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.gff3 file not showing in build-index with gene model
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1
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180
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November 27, 2023
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Question about genome-wide alternative splicing analysis own samples
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3
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256
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November 15, 2023
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StringTie producing empty column for gene and transcript counts
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9
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633
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December 21, 2023
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RNA-Seq analysis in Galaxy
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12
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880
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December 21, 2023
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Basic Question - FPKM Count - What do I use as the reference gene model?
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2
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568
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December 21, 2023
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"genomeDir": an invalid option
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4
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313
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March 17, 2026
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Converting GFF to GTF
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6
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1154
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December 21, 2023
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Retired ensemble genes -- should I identify possible successors
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1
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183
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September 11, 2023
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