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Expanding the built-in reference genomes
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|
2
|
273
|
July 12, 2023
|
|
Annotation of Deseq2 results not giving full results
|
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4
|
294
|
December 21, 2023
|
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Troubleshooting for Deseq2 annotation
|
|
5
|
707
|
December 21, 2023
|
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Showing NA for annotation after running "Annotate DESeq2/DEXSeq output tables"
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4
|
446
|
December 21, 2023
|
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Very low assigned reads in featureCounts
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3
|
842
|
December 21, 2023
|
|
MSTRG to Gene Name Conversion
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6
|
4703
|
December 21, 2023
|
|
RNA seq analysis on transgenic animal
|
|
13
|
545
|
April 26, 2023
|
|
STAR GTF file error for newbie
|
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4
|
472
|
April 24, 2023
|
|
Error in train augustus tool
|
|
2
|
464
|
December 21, 2023
|
|
Help in How to generate a GFF file
|
|
3
|
494
|
December 21, 2023
|
|
Feature counting missing counts
|
|
4
|
401
|
December 21, 2023
|
|
How to get custom genome and annotation into Galaxy
|
|
2
|
436
|
December 21, 2023
|
|
Adding new Reference genomes to the DeepVariant deep learning-based variant caller
|
|
1
|
589
|
January 26, 2023
|
|
Human hg38 GTF, source Gencode
|
|
3
|
376
|
January 12, 2023
|
|
Salmon output issue: differences in line numbers of Quantification and Gene Quantification output files
|
|
6
|
697
|
January 11, 2023
|
|
RNA-STAR and hg38 GTF reference annotation
|
|
8
|
7382
|
December 19, 2022
|
|
Reference genome for RNAseq analysis
|
|
2
|
425
|
December 21, 2023
|
|
Problems with the tool featureCounts: Fatal error: Exit code 255 ()
|
|
5
|
2595
|
December 21, 2023
|
|
Getting error while using HtSeq Count
|
|
2
|
654
|
December 21, 2023
|
|
Converting GFF3 to GTF
|
|
3
|
492
|
January 31, 2023
|
|
GFF3 to GTF conversion
|
|
6
|
1620
|
October 25, 2022
|
|
FeatureCounts: All Features Either Unassigned_Unmapped or Unassigned_NoFeatures
|
|
2
|
454
|
December 21, 2023
|
|
RNA Seq, error alignment after trimming
|
|
8
|
1592
|
December 21, 2023
|
|
AnnotateMyIDs error
|
|
5
|
636
|
October 13, 2022
|
|
Mouse GTF reference annotation
|
|
3
|
443
|
December 21, 2023
|
|
Couldn't annotate any gene Name using Annotate DESeq2/DEXSeq output tables
|
|
7
|
2275
|
September 28, 2022
|
|
Can I use data based on different genome assemblies?
|
|
1
|
307
|
September 23, 2022
|
|
Error when attempting stringtie assembly: no reference transcripts found. Using WBcel235 from NCBI
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|
2
|
548
|
December 21, 2023
|
|
RNA STAR problem: no options available for reference genome with built in index.
|
|
2
|
507
|
September 21, 2022
|
|
Request for of Plasmodium species reference genome
|
|
2
|
351
|
January 26, 2023
|