Topics tagged reference-annotation

Topic	Replies	Views	Activity
DEseq2 Error in read.table usegalaxy.org support input , troubleshooting , reference-annotation	4	266	October 26, 2020
Another STAR error -- Resolved usegalaxy.org support custom-genome , reference-annotation , gtf , rna-star , custom-build	8	703	October 2, 2020
Reference genome and associated gene model (gtf, gff3) file for splice junctions in RNA STAR gft , reference-annotation , rna-star	1	504	August 27, 2020
how to convert gtf-to-gff? rna-seq , gff , reference-annotation , gtf , gff3	3	2419	July 27, 2020
getSpliced() error: improper genomic coordinate 46954453 on chrUn_random for TCONS_00084296 tool-deprecated , reference-annotation , reference-genome	2	469	June 18, 2020
MSTRG to Gene Name Conversion stringtie , deseq2 , reference-annotation , gtf	3	1693	May 15, 2020
Problems with attributes in featureCounts -- GFF3 input instead of GTF usegalaxy.eu support reference-annotation , gtf , gff3	1	1331	February 24, 2020
DESeq2 Error on Kallisto output usegalaxy.org support input , deseq2 , reference-annotation	3	513	December 5, 2019
RNA Star does not recognize ENCODE gtf files usegalaxy.eu support input , gff , reference-annotation , gtf , datatype-validation	3	914	November 26, 2019
How to locate a reference annotation GFT file: example sacCer3 + others usegalaxy.org support reference-annotation , gtf , igenomes	2	582	August 30, 2019
Bowtie 2 - in Workflow no custom reference genome available -- Solution: Create a Custom Build usegalaxy.eu support custom-genome , reference-annotation , reference-genome , custom-build	1	459	August 27, 2019
Sequence to gene name usegalaxy.org support uniprot , blast , annotatemyids , reference-annotation , feature-annotation	2	363	July 23, 2019
No Reference GFF file available in ClosestBed tool usegalaxy.org support bedtools , reference-annotation	7	1515	June 6, 2019
htseq-count gene IDs zero usegalaxy.org support reference-annotation , gtf	2	617	May 24, 2019
What exactly are the "built-in references" in Galaxy's HISAT2? featurecounts , hisat2 , reference-annotation , gtf , reference-genome	2	883	March 12, 2019