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FAQ: NCBI reference data
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0
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6
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June 12, 2025
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Want to add a new organism for HISAT2 analysis
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1
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7
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June 12, 2025
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HISAT2 and RNA STAR reference genomes
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2
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15
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April 25, 2025
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Getting NCBI Reference genome indexed for tools: custom genome, reference genome, reference annotation
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10
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50
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March 14, 2025
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Ensembl gene annotation gtf for rat problem with RNA STAR
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2
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35
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February 26, 2025
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Request to upload/add new version of reference genome of Aedes albopictus (Genome assembly AalbF5)
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1
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15
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February 19, 2025
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Custom reference genome annotation
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6
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1097
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February 14, 2025
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How to select a different reference genome from that already present using the tool RNA-STAR
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2
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14
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February 10, 2025
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I can not get counts
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5
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17
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January 31, 2025
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Built-in reference genome of domestic water buffalo
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1
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24
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January 6, 2025
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RNAstar Select Reference Genome - Species Not Available - contact the Galaxy team (--genomeDir)
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1
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19
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December 4, 2024
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Bowtie2 reference genome of Goat (Capra Hircus)
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1
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14
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November 25, 2024
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Files for miRNA differential expression analysis
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9
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2041
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November 12, 2024
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Reference annotation for TAIR10
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1
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76
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November 6, 2024
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Adding C. elegans WS235 ce11 reference genome to be used in RNA STAR
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1
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39
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November 6, 2024
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Inquiry about lettuce genome
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2
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54
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October 7, 2024
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Train Augustus doesn't work
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7
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182
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September 10, 2024
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SICER is not available for the genome.
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1
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23
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August 13, 2024
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mm10/GRCM38 genome
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1
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28
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August 8, 2024
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Input Custom Reference Genome into Workflow
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2
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30
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August 7, 2024
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How to add a new reference-genome on HISTAT2? I need S. agalactiae BM110
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5
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211
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July 1, 2024
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Correct reference transcriptome for Salmon quant on existing RNASTAR alignments
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3
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511
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May 16, 2024
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RNA Star: Can I generate a temporary index with files from previous assemblies?
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2
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128
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May 13, 2024
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RNA STAR quantimode count difference between run on galaxy and on self linux server
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4
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106
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May 7, 2024
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Error Using human hg38 in Reference-based RNA-Seq data analysis
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2
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240
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April 29, 2024
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about tutorial files and their sources
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8
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221
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April 26, 2024
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Adding genome reference?
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2
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217
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April 23, 2024
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Adding the tardigrade (H. exemplaris) genome to Galaxy
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2
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169
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April 11, 2024
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sRNAPipe query for input fasta files
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1
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114
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March 28, 2024
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Hg38 canonical genome
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1
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234
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February 28, 2024
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