Topics tagged reference-genome

Topic	Replies	Views	Activity
Train Augustus doesn't work usegalaxy.org.au support troubleshooting , reference-annotation , reference-genome , genome-annotation	7	261	September 10, 2024
SICER is not available for the genome. reference-index , custom-genome , reference-genome , custom-build , tool-help , peakcalling_sicer	1	71	August 13, 2024
mm10/GRCM38 genome usegalaxy.eu support reference-index , reference-genome	1	59	August 8, 2024
Input Custom Reference Genome into Workflow workflow , reference-genome , atac-seq , iwc-workflows	2	75	August 7, 2024
How to add a new reference-genome on HISTAT2? I need S. agalactiae BM110 usegalaxy.eu support reference-genome	5	318	July 1, 2024
RNA Star: Can I generate a temporary index with files from previous assemblies? reference-annotation , reference-genome	2	163	May 13, 2024
RNA STAR quantimode count difference between run on galaxy and on self linux server reference-annotation , reference-genome	4	135	May 7, 2024
Error Using human hg38 in Reference-based RNA-Seq data analysis transcriptomics , reference-annotation , reference-genome	2	342	April 29, 2024
about tutorial files and their sources gtn-tutorial , reference-index , sra , reference-annotation , reference-genome , __apply_rules__	9	263	April 7, 2026
Adding genome reference? usegalaxy.org support reference-index , custom-genome , reference-annotation , reference-genome	2	247	April 23, 2024
sRNAPipe query for input fasta files usegalaxy.eu support reference-annotation , reference-genome , tool-help	1	148	March 28, 2024
Hg38 canonical genome usegalaxy.eu support reference-genome	1	280	February 28, 2024
hg38 patch 11 fa.gz error reference-index , reference-annotation , reference-genome	1	274	January 31, 2024
Reference genomes at public Galaxy servers: GRCh38/hg38 example Resources reference-index , custom-genome , igv , reference-genome , resources	0	1597	January 29, 2024
Custom genome + custom build: How to use a genome that is not natively indexed at the server you are working at Resources fasta-manipulation , custom-genome , reference-genome , custom-build , resources	5	815	January 30, 2024
Reference Genome usegalaxy.org support custom-genome , reference-genome , custom-build	7	733	January 29, 2024
Regarding SNP eff usegalaxy.org support reference-annotation , reference-genome , variant-analysis , snpeff	2	195	January 17, 2024
Mapping to a uploaded (large) reference genome dataset -- Platform Choices usegalaxy.org support reference-genome	16	1671	December 19, 2023
Mapping Leishmania transcript using RNA STAR custom-genome , reference-annotation , reference-genome , third-party-identities	1	267	December 12, 2023
There are no locally cached or built-in genomes on use.galaxy.org usegalaxy.org support mapping , reference-genome , bwa_mem2	1	272	November 29, 2023
Human Reference genome usegalaxy.org support reference-annotation , reference-genome	2	293	November 28, 2023
Question about genome-wide alternative splicing analysis own samples transcriptomics , reference-annotation , reference-genome	3	256	November 15, 2023
"genomeDir": an invalid option devops-administration , reference-index , galaxy-local , reference-annotation , reference-genome	4	313	March 17, 2026
Would it be possible for galaxy to include Camelus dromedarius reference genome in built in index ? reference-index , custom-genome , reference-genome , custom-build	4	411	August 16, 2023
RNA star with reference genome from history error usegalaxy.eu support custom-genome , transcriptomics , reference-annotation , reference-genome , custom-build , deseq2 , rna_star	2	353	July 22, 2025
Expanding the built-in reference genomes usegalaxy.eu support custom-genome , reference-annotation , reference-genome , custom-build	2	376	July 12, 2023
Sus Scrofa 11.1 reference genome in Freebayes usegalaxy.eu support devops-administration , freebayes , mapping , reference-genome	1	366	June 27, 2023
Version and source of the galaxy built-in genome usegalaxy.eu support reference-index , custom-genome , reference-genome , custom-build	2	1035	May 5, 2023
Source of built in reference genomes usegalaxy.eu support custom-genome , reference-genome , custom-build	1	480	May 5, 2023
Very low assigned reads in featureCounts usegalaxy.org.au support troubleshooting , mapping , transcriptomics , igv , reference-annotation , reference-genome , featurecounts	3	1718	December 21, 2023