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Custom genome + custom build: How to use a genome that is not natively indexed at the server you are working at
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5
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708
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January 30, 2024
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Reference Genome
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7
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545
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January 29, 2024
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Regarding SNP eff
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2
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170
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January 17, 2024
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Mapping to a uploaded (large) reference genome dataset -- Platform Choices
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16
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1534
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December 19, 2023
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Mapping Leishmania transcript using RNA STAR
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1
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241
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December 12, 2023
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There are no locally cached or built-in genomes on use.galaxy.org
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1
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248
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November 29, 2023
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Human Reference genome
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2
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265
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November 28, 2023
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Question about genome-wide alternative splicing analysis own samples
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3
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210
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November 15, 2023
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"genomeDir": an invalid option
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3
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289
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October 17, 2023
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Would it be possible for galaxy to include Camelus dromedarius reference genome in built in index ?
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4
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363
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August 16, 2023
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RNA star with reference genome from history error
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1
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311
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August 7, 2023
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Expanding the built-in reference genomes
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2
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345
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July 12, 2023
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Sus Scrofa 11.1 reference genome in Freebayes
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1
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346
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June 27, 2023
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version and source of the galaxy built-in genome
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2
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956
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May 5, 2023
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Source of built in reference genomes
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1
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457
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May 5, 2023
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Very low assigned reads in featureCounts
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3
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1446
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December 21, 2023
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Rat reference genome selection
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2
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614
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April 26, 2023
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mirdeep2 errors -- Solution: verify input format
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1
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450
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April 13, 2023
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Genome build for dog in RNA STAR
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5
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386
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March 20, 2023
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How to get custom genome and annotation into Galaxy
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2
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515
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December 21, 2023
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CVMFS twobit indexes for hg38 not downloaded as reference
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4
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396
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February 10, 2023
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Adding new Reference genomes to the DeepVariant deep learning-based variant caller
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1
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769
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January 26, 2023
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Uploading new reference genome
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4
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618
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December 19, 2022
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Need reference genome for Danio rerio for using HISAT2
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1
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350
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November 16, 2022
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how to do RNA STAR with Borrelia burgdorferi data
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2
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322
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December 21, 2023
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Can I use data based on different genome assemblies?
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1
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350
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September 23, 2022
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RNA STAR problem: no options available for reference genome with built in index.
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2
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600
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September 21, 2022
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Request for of Plasmodium species reference genome
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2
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400
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January 26, 2023
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C. elegans genome version update
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3
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603
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September 17, 2022
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Rattus norvegicus (Norway rat) genome assembly Rnor_7.0 (rn7)
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2
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695
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June 24, 2022
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