Topics tagged reference-index

Topic	Replies	Views	Activity
Bracken database missed usegalaxy.eu support reference-index , kraken2 , bracken	1	59	February 19, 2025
Request to upload/add new version of reference genome of Aedes albopictus (Genome assembly AalbF5) usegalaxy.org support reference-index , custom-genome , reference-annotation , reference-genome , reference-transcriptome	1	42	February 19, 2025
Kraken2 new Core-nt reference usegalaxy.org support reference-index	6	141	February 18, 2025
Converting Metaphlan SGBs to GTDB reference-index , gtdbtk_classify_wf , microgalaxy	1	444	February 14, 2025
GTDB-Tk Classify genomes reference-index , metagenomics , tool-help , gtdbtk_classify_wf , microgalaxy , evolution	2	590	February 14, 2025
Database missing for GTDB-Tk tool usegalaxy.eu support reference-index , gtdbtk_classify_wf , microgalaxy	3	165	February 14, 2025
gtdbtk_classify_wf Missing Database! usegalaxy.eu support reference-index , gtdbtk_classify_wf , microgalaxy	3	127	February 14, 2025
Adding nt_core db to Bracken and related workflow tools usegalaxy.eu support reference-index , kraken2 , bracken	7	175	February 4, 2025
usegalaxy.eu cufflinks no cached reference data usegalaxy.eu support reference-index , iwc-workflows	6	89	January 24, 2025
Chlamydomonas genome usegalaxy.org support reference-index	1	42	January 22, 2025
ncbi fcs gx database not available in eu but on org reference-index	2	161	January 8, 2025
Kraken 2 core nt database and large amount of unclassified reads? usegalaxy.eu support reference-index , single-cell	6	863	January 8, 2025
Built-in reference genome of domestic water buffalo usegalaxy.org.au support reference-index , reference-annotation , reference-genome	1	75	January 6, 2025
Pharokka Database usegalaxy.eu support reference-index , data-manager	10	756	January 2, 2025
CheckV end to end (Galaxy Version 1.0.3+galaxy0) usegalaxy.eu support reference-index	4	99	December 23, 2024
Not identifying fungi with kraken2 PlusPF database usegalaxy.org support reference-index , kraken2	1	142	December 13, 2024
Kraken2 database reference-index , metagenomics	24	952	November 26, 2024
MAARJAM database usegalaxy.org support reference-index	7	118	November 28, 2024
Bowtie2 reference genome of Goat (Capra Hircus) usegalaxy.org support reference-index , custom-genome , mapping , reference-annotation , reference-genome , custom-build , tool-help , reference-transcriptome , bowtie2	1	56	November 25, 2024
Exploring Mothur hits to a SILVA database reference-index , troubleshooting , mothur	1	51	November 11, 2024
Database for Kraken2 usegalaxy.org support reference-index , evolution	10	217	November 8, 2024
Reference annotation for TAIR10 reference-index , reference-annotation , reference-genome , reference-transcriptome	1	205	November 6, 2024
problem with funannotate usegalaxy.eu support reference-index , server-open-issue , funannotate	3	733	June 1, 2023
reference genome for STARsolo usegalaxy.org support reference-index , custom-genome , transcriptomics , tool-help , rna_starsolo	2	109	October 9, 2024
request for tomato genome version SL4.0 reference-index	7	819	October 9, 2024
Inquiry about lettuce genome Resources reference-index , custom-genome , reference-annotation , reference-genome , custom-build , resources	2	125	October 7, 2024
MetaPhlAn Database reference-index , metagenomics , galaxy-biobakery , usinggalaxy	1	134	September 16, 2024
Optimizing STAR Mapping for Large-Scale Genome Annotation: Managing Memory Overflows in RNA-Seq Workflows workflow , reference-index , galaxy-local , mapping , transcriptomics , exceeds-memory-error	6	147	September 10, 2024
Updates for Kraken2 databases: Viruses and others reference-index , metagenomics , server-open-issue , kraken2	1	196	September 9, 2024
Map With BWA-MEM not working with one particular reference genome usegalaxy.org support reference-index , server-open-issue	5	285	August 30, 2024