Topics tagged reference-index

Topic	Replies	Views	Activity
Diamond BLAST reference database issue reference-index , tool-help , bg_diamond	2	123	August 29, 2024
Remove installed databases reference-index , galaxy-local , data-manager	3	86	March 17, 2026
SICER is not available for the genome. reference-index , custom-genome , reference-genome , custom-build , tool-help , peakcalling_sicer	1	74	August 13, 2024
STAR --genomeDir option usegalaxy.org support reference-index	1	102	August 13, 2024
Use Create DBKey and Reference Genome to define new entries devops-administration , reference-index , galaxy-local , data-manager	6	116	March 17, 2026
mm10/GRCM38 genome usegalaxy.eu support reference-index , reference-genome	1	63	August 8, 2024
Krocus database missing usegalaxy.eu support reference-index	2	50	August 13, 2024
Kraken2 databases mixed up reference-index , server-open-issue	16	781	June 24, 2024
Metaphlan vJun23 reference-index	1	159	May 24, 2024
can't download databases in new local galaxy instance ("This tool was disabled before the job completed") reference-index , galaxy-local , gtdbtk_classify_wf , microgalaxy	2	145	February 14, 2025
about tutorial files and their sources gtn-tutorial , reference-index , sra , reference-annotation , reference-genome , __apply_rules__	9	265	April 7, 2026
MITOS 2 Yeast Genetic Code reference-index	2	170	April 25, 2024
Adding genome reference? usegalaxy.org support reference-index , custom-genome , reference-annotation , reference-genome	2	248	April 23, 2024
How database assignments are used to access a fasta index: custom genomes, custom builds, server indexes Resources fasta-manipulation , reference-index , custom-genome , galaxy-local , troubleshooting , custom-build , resources	2	198	September 17, 2024
Genomes are missing from the dbdey table while present in bowtie2 usegalaxy.eu support reference-index	5	180	January 22, 2025
get fasta file for installed genomes in history reference-index	4	223	March 6, 2024
The latest reference genome of pig usegalaxy.org support reference-index	1	215	February 20, 2024
Bwa-mem2 data manager??? reference-index , galaxy-local , bwa_mem2	3	383	March 17, 2026
Reference genome options devops-administration , reference-index , custom-genome	1	245	February 14, 2024
hg38 patch 11 fa.gz error reference-index , reference-annotation , reference-genome	1	276	January 31, 2024
Custom reference genome troubleshooting reference-index , custom-genome	1	172	January 30, 2024
Reference genomes at public Galaxy servers: GRCh38/hg38 example Resources reference-index , custom-genome , igv , reference-genome , resources	0	1621	January 29, 2024
Subject: Urgent Assistance Needed with SnpEff Custom Database Creation reference-index , snpeff	2	452	January 19, 2024
bowtie index build error for large genome which is 15GB ( one chromosome in over 2GB) devops-administration , reference-index	3	618	January 10, 2024
Request: kraken2 DB update usegalaxy.eu support reference-index , server-open-issue	0	147	December 26, 2023
HUMAnN calde-specific marker genes, nucleotide, protein database note available on .org server reference-index , metagenomics , humann	1	326	January 9, 2024
Need reference genome usegalaxy.org support reference-index	1	155	January 9, 2024
Missing database for "Kraken-report" in galaxay eu server usegalaxy.eu support reference-index	1	495	December 20, 2023
issues with the pipeliine DNA Methylation data analysis usegalaxy.org support reference-index	1	243	December 13, 2023
Mitos2 Reference Data usegalaxy.org support reference-index	1	408	December 11, 2023