Topics tagged reference-index

Topic	Replies	Views	Activity
Pharokka Database usegalaxy.eu support reference-index , data-manager	10	706	January 2, 2025
CheckV end to end (Galaxy Version 1.0.3+galaxy0) usegalaxy.eu support reference-index	4	54	December 23, 2024
Not identifying fungi with kraken2 PlusPF database usegalaxy.org support reference-index , kraken2	1	85	December 13, 2024
Kraken2 database reference-index , metagenomics	26	706	December 9, 2024
MAARJAM database usegalaxy.org support reference-index	7	45	November 28, 2024
Bowtie2 reference genome of Goat (Capra Hircus) usegalaxy.org support reference-index , custom-genome , mapping , reference-annotation , reference-genome , custom-build , tool-help , reference-transcriptome , bowtie2	1	27	November 25, 2024
Exploring Mothur hits to a SILVA database reference-index , troubleshooting , mothur	1	37	November 11, 2024
Database for Kraken2 usegalaxy.org support reference-index , evolution	10	166	November 8, 2024
Reference annotation for TAIR10 reference-index , reference-annotation , reference-genome , reference-transcriptome	1	128	November 6, 2024
problem with funannotate usegalaxy.eu support reference-index , server-open-issue , funannotate	3	683	June 1, 2023
reference genome for STARsolo usegalaxy.org support reference-index , custom-genome , transcriptomics , tool-help , rna_starsolo	3	70	December 4, 2024
request for tomato genome version SL4.0 reference-index	7	749	October 9, 2024
Inquiry about lettuce genome Resources reference-index , custom-genome , reference-annotation , reference-genome , custom-build , resources	2	86	October 7, 2024
MetaPhlAn Database reference-index , galaxy-local , metagenomics	1	101	September 16, 2024
Optimizing STAR Mapping for Large-Scale Genome Annotation: Managing Memory Overflows in RNA-Seq Workflows workflow , reference-index , galaxy-local , mapping , transcriptomics , exceeds-memory-error	6	61	September 10, 2024
Updates for Kraken2 databases: Viruses and others reference-index , metagenomics , server-open-issue , kraken2	1	155	September 9, 2024
Map With BWA-MEM not working with one particular reference genome usegalaxy.org support reference-index , server-open-issue	5	186	August 30, 2024
Diamond BLAST reference database issue reference-index , tool-help , bg_diamond	2	102	August 29, 2024
Remove installed databases reference-index , galaxy-local , data-manager	2	64	August 14, 2024
SICER is not available for the genome. reference-index , custom-genome , reference-genome , custom-build , tool-help , peakcalling_sicer	1	39	August 13, 2024
STAR --genomeDir option usegalaxy.org support reference-index	1	58	August 13, 2024
mm10/GRCM38 genome usegalaxy.eu support reference-index , reference-genome	1	43	August 8, 2024
Krocus database missing usegalaxy.eu support reference-index	2	34	August 13, 2024
Kraken2 databases mixed up reference-index , server-open-issue	16	669	June 24, 2024
Metaphlan vJun23 reference-index	1	145	May 24, 2024
can't download databases in new local galaxy instance ("This tool was disabled before the job completed") reference-index , galaxy-local , gtdbtk_classify_wf , microgalaxy	2	114	February 14, 2025
about tutorial files and their sources gtn-tutorial , reference-index , sra , reference-annotation , reference-genome , __apply_rules__	8	243	April 26, 2024
MITOS 2 Yeast Genetic Code reference-index	2	145	April 25, 2024
Adding genome reference? usegalaxy.org support reference-index , custom-genome , reference-annotation , reference-genome	2	226	April 23, 2024
How database assignments are used to access a fasta index: custom genomes, custom builds, server indexes Resources fasta-manipulation , database , reference-index , custom-genome , galaxy-local , troubleshooting , custom-build , resources	2	161	September 17, 2024