Topics tagged reference-index

Topic	Replies	Views	Activity
Reference annotation for TAIR10 reference-index , reference-annotation , reference-genome , reference-transcriptome	1	57	November 6, 2024
problem with funannotate usegalaxy.eu support reference-index , server-open-issue , funannotate	3	651	June 1, 2023
reference genome for STARsolo usegalaxy.org support reference-index , custom-genome , transcriptomics , tool-help , rna_starsolo	3	34	December 4, 2024
request for tomato genome version SL4.0 reference-index	7	658	October 9, 2024
Inquiry about lettuce genome Resources reference-index , custom-genome , reference-annotation , reference-genome , custom-build , resources	2	38	October 7, 2024
MetaPhlAn Database reference-index , galaxy-local , metagenomics	1	51	September 16, 2024
Optimizing STAR Mapping for Large-Scale Genome Annotation: Managing Memory Overflows in RNA-Seq Workflows workflow , reference-index , galaxy-local , mapping , transcriptomics , exceeds-memory-error	6	39	September 10, 2024
Updates for Kraken2 databases: Viruses and others reference-index , metagenomics , server-open-issue , kraken2	1	78	September 9, 2024
Map With BWA-MEM not working with one particular reference genome usegalaxy.org support reference-index , server-open-issue	5	98	August 30, 2024
Diamond BLAST reference database issue reference-index , tool-help , bg_diamond	2	53	August 29, 2024
Remove installed databases reference-index , galaxy-local , data-manager	2	40	August 14, 2024
SICER is not available for the genome. reference-index , custom-genome , reference-genome , custom-build , tool-help , peakcalling_sicer	1	18	August 13, 2024
STAR --genomeDir option usegalaxy.org support reference-index	1	35	August 13, 2024
mm10/GRCM38 genome usegalaxy.eu support reference-index , reference-genome	1	23	August 8, 2024
Krocus database missing usegalaxy.eu support reference-index	2	17	August 13, 2024
Kraken2 databases mixed up reference-index , server-open-issue	16	549	June 24, 2024
Metaphlan vJun23 reference-index	1	118	May 24, 2024
can't download databases in new local galaxy instance ("This tool was disabled before the job completed") reference-index , galaxy-local , gtdbtk_classify_wf , microgalaxy	2	96	February 14, 2025
about tutorial files and their sources gtn-tutorial , reference-index , sra , reference-annotation , reference-genome , __apply_rules__	8	215	April 26, 2024
MITOS 2 Yeast Genetic Code reference-index	2	122	April 25, 2024
Adding genome reference? usegalaxy.org support reference-index , custom-genome , reference-annotation , reference-genome	2	213	April 23, 2024
How database assignments are used to access a fasta index: custom genomes, custom builds, server indexes Resources fasta-manipulation , database , reference-index , custom-genome , galaxy-local , troubleshooting , custom-build , resources	2	124	September 17, 2024
Adding the tardigrade (H. exemplaris) genome to Galaxy database , reference-index , reference-genome	2	168	April 11, 2024
Genomes are missing from the dbdey table while present in bowtie2 usegalaxy.eu support reference-index	5	129	January 22, 2025
get fasta file for installed genomes in history reference-index	4	138	March 6, 2024
The latest reference genome of pig usegalaxy.org support reference-index	1	184	February 20, 2024
Bwa-mem2 data manager??? reference-index , galaxy-local , bwa_mem2	2	317	February 18, 2024
Reference genome options server-admin , reference-index , custom-genome	1	210	February 14, 2024
hg38 patch 11 fa.gz error reference-index , reference-annotation , reference-genome	1	239	January 31, 2024
Custom reference genome troubleshooting reference-index , custom-genome	1	144	January 30, 2024