Topics tagged reference-index

Topic	Replies	Views	Activity
Adding genome reference? usegalaxy.org support reference-index , custom-genome , reference-annotation , reference-genome	2	236	April 23, 2024
How database assignments are used to access a fasta index: custom genomes, custom builds, server indexes Resources fasta-manipulation , database , reference-index , custom-genome , galaxy-local , troubleshooting , custom-build , resources	2	164	September 17, 2024
Adding the tardigrade (H. exemplaris) genome to Galaxy database , reference-index , igv , reference-genome	2	182	April 11, 2024
Genomes are missing from the dbdey table while present in bowtie2 usegalaxy.eu support reference-index	5	170	January 22, 2025
get fasta file for installed genomes in history reference-index	4	172	March 6, 2024
The latest reference genome of pig usegalaxy.org support reference-index	1	202	February 20, 2024
Bwa-mem2 data manager??? reference-index , galaxy-local , bwa_mem2	2	351	February 18, 2024
Reference genome options server-admin , reference-index , custom-genome	1	228	February 14, 2024
hg38 patch 11 fa.gz error reference-index , reference-annotation , reference-genome	1	265	January 31, 2024
Custom reference genome troubleshooting reference-index , custom-genome	1	162	January 30, 2024
Reference genomes at public Galaxy servers: GRCh38/hg38 example Resources reference-index , custom-genome , igv , reference-genome , resources	0	1351	January 29, 2024
Subject: Urgent Assistance Needed with SnpEff Custom Database Creation reference-index , snpeff	2	416	January 19, 2024
bowtie index build error for large genome which is 15GB ( one chromosome in over 2GB) server-admin , reference-index	3	582	January 10, 2024
Request: kraken2 DB update usegalaxy.eu support reference-index , server-open-issue	0	144	December 26, 2023
HUMAnN calde-specific marker genes, nucleotide, protein database note available on .org server reference-index , metagenomics	1	312	January 9, 2024
Need reference genome usegalaxy.org support reference-index	1	143	January 9, 2024
Missing database for "Kraken-report" in galaxay eu server usegalaxy.eu support reference-index	1	484	December 20, 2023
issues with the pipeliine DNA Methylation data analysis usegalaxy.org support reference-index	1	230	December 13, 2023
Mitos2 Reference Data usegalaxy.org support reference-index	1	396	December 11, 2023
Bracken database error usegalaxy.eu support reference-index , bracken	6	389	December 20, 2023
Request for megablast tool usegalaxy.eu support reference-index , mapping , blast	3	267	November 3, 2023
"genomeDir": an invalid option server-admin , reference-index , galaxy-local , reference-annotation , reference-genome	3	297	October 17, 2023
Can't get 'Get organelle from reads' to work usegalaxy.eu support reference-index	5	542	September 11, 2023
Updating databases usegalaxy.eu support reference-index , blast	2	518	August 21, 2023
Would it be possible for galaxy to include Camelus dromedarius reference genome in built in index ? reference-index , custom-genome , reference-genome , custom-build	4	387	August 16, 2023
No Uniprot Swissprot database available in Diamond alignment tool for short sequences usegalaxy.org support database , reference-index	1	322	August 7, 2023
Database with clade-specific marker genes - metagenomics data usegalaxy.eu support reference-index , metagenomics	5	439	July 26, 2023
SAM BAM conversion and sort order reference-index , mapping	3	620	July 20, 2023
How to get the genome of interest listed in RNA STAR in Galaxy reference-index , custom-genome , transcriptomics , rna_star	4	432	July 19, 2023
Update tool DB (Bakta) usegalaxy.eu support reference-index	5	252	December 20, 2023