Topics tagged resources

Topic	Replies	Views	Activity
BUSCO error: refseq db not found usegalaxy.org support genome-annotation , resources , tool-help , busco	8	106	December 10, 2025
Request for the add of genome reference-index , custom-genome , custom-build , resources	1	23	December 10, 2025
Choosing datafiles for DESeq2 usegalaxy.eu support collections , tags , resources , tool-help , deseq2 , select	4	156	April 30, 2026
Recursive download of multiple files with "wget"or "curl" usegalaxy.org support download , troubleshooting , user-preferences , resources	4	86	December 4, 2025
HUMAnN fails due to MetaPhlAn database mismatch Resources troubleshooting , resources , tool-help , microgalaxy , humann	2	85	April 15, 2026
Salmon Quant paired-end read entry usegalaxy.eu support troubleshooting , collections , resources	2	55	December 23, 2025
Kraken2 Database Fungi Resources resources , tool-help , kraken2	4	301	October 13, 2025
FreeBays Error? Check your Read Groups! usegalaxy.org support freebayes , resources	2	18	April 15, 2026
Bowtie2 -- Paired end samples? Use a List of Pairs collection! mapping , collections , resources , tool-help , bowtie2	5	160	October 3, 2025
How to find the reference transcriptome for analysis tools: GRCh38/hg38 example Resources troubleshooting , reference-annotation , reference-genome , resources , tool-help , reference-transcriptome , salmon , kallisto_quant	3	870	May 16, 2024
Kraken2 reference database for shotgun sequencing data Resources resources , kraken2 , microgalaxy , iwc-workflows	4	59	September 30, 2025
Collection folder VIDEO: How to create a single or paired end dataset collection folder (shapes and organization) Resources collections , resources , tool-help , metawrapmg_binning	3	78	September 29, 2025
How do I use galaxy tools to create a paired end collection folder (data shapes and organization) Resources collections , resources	2	106	December 3, 2024
Missing "paired" input for fastp tool Resources development-tools , resources , tool-help , fastp	8	296	February 24, 2025
Memory error with rnaSPAdes? Try QA/QC and Sub-sample sequences gtn-tutorial , assembly , transcriptomics , exceeds-memory-error , resources , tool-help , rnaspades	2	46	April 18, 2026
Assembly statistics in reference based RNA seq analysis_tools Resources transcriptomics , resources , tool-help , rna_quast	2	297	April 18, 2026
Avoid :warning: Liftover and try using a CrossMap tool instead Resources liftover , resources , crossmap	3	971	September 25, 2025
This job was terminated because itused more memory than it wasallocated Resources exceeds-memory-error , resources , single-cell	1	104	April 25, 2025
What are the different types of assembly? gtn-tutorial , assembly , resources , iwc-workflows	2	42	April 18, 2026
Tool 'sra_source' does not exist Resources gtn-tutorial , upload , resources , iwc-workflows	2	118	September 23, 2025
BAM index, fasta indexes, display applications, custom genome builds, IGV Resources igv , resources	4	211	April 18, 2026
Asking for unmapped genes in RNA sequencing via Galaxy troubleshooting , mapping , transcriptomics , resources , rna_star	1	31	August 25, 2025
Implement/enable "Manage Your Remote File Sources" on local version of galaxy usegalaxy.org support devops-administration , resources	3	48	August 24, 2025
Flye giving error with bacterial genome Resources assembly , resources	2	52	April 18, 2026
Large genome assembly? See VGP resources and access your self-serve extended data storage! Resources assembly , storage-dashboard , resources , iwc-workflows	2	39	April 18, 2026
Help with RNA Star, Featurecounts, and reference annotation choices Resources transcriptomics , reference-annotation , resources , featurecounts , iwc-workflows	1	177	August 19, 2025
GTN Transcriptomics Hands-on: Genome-wide alternative splicing analysis. Troubleshooting reference data choices! Resources transcriptomics , reference-genome , resources , tool-help , reference-transcriptome , rna_quast	27	344	August 19, 2025
Qiime2 import troubleshooting: Retain original Illumnia file names + use simple list collection Resources collections , resources , qiime2 , qiime2_core__tools__import , collection-shape	2	120	August 8, 2025
Job delays? How to check your job queues and how to work at multiple public UseGalaxy servers Resources workflow , queued-gray-datasets , server-status , resources , iwc-workflows	6	195	August 8, 2025
Downloading SnpEff database into history: Create database instead! Resources resources , snpeff	3	213	July 18, 2025