Topics tagged rna-seq

Topic	Replies	Views	Activity
Feature count on exon level instead gene level usegalaxy.eu support transcriptomics , reference-annotation , rna-seq , featurecounts	3	27	January 28, 2025
UCSC Reference Genome and GTF Fatal Error no valid exons in the GTF file usegalaxy.eu support custom-genome , mapping , fastq-format-error , ucsc , rna-seq , featurecounts , fastq-format , rna_star	3	44	January 22, 2025
Genes from my reference genome are not annotated in output files. Trying to get read count per gene/abundant gene list usegalaxy.org support troubleshooting , reference-annotation , rna-seq	1	19	October 1, 2024
Intersection between two datasets/lists of genes usegalaxy.org support data-manipulation , rna-seq	2	25	August 24, 2024
Heatmaps of DEGs presented as log2(FC)/RNA-seq usegalaxy.be support rna-seq	0	58	August 8, 2024
Heatmaps of DEGs presented as z-scores/RNA-seq usegalaxy.org support rna-seq	0	78	August 8, 2024
bedtools intersect intervals usegalaxy.eu support chip-seq , rna-seq	5	197	June 21, 2024
Title: Scatter plot showing correlation among ChIP-seq and RNA-seq data usegalaxy.org support chip-seq , rna-seq	2	168	June 7, 2024
error with RNA STAR usegalaxy.org support rna-seq	1	121	April 17, 2024
Mstrg convertion into gene symbol. Is this possible? usegalaxy.eu support transcriptomics , reference-annotation , rna-seq , stringtie	1	354	March 5, 2024
Problem with Output files with pRESTO via Galaxy usegalaxy.org support gtn-tutorial , workflow , transcriptomics , rna-seq	10	354	January 22, 2024
Analysis of splice variants. gtn-tutorial , transcriptomics , rna-seq , vcf	4	308	January 2, 2024
problemas herramientas usegalaxy.org support gtn-tutorial , metagenomics , rna-seq	1	158	November 20, 2023
Error with HTseq RNAseq read count transcriptomics , htseq-count , resources , rna-seq	1	305	November 17, 2023
Issue with StringTie usegalaxy.org support troubleshooting , mapping , transcriptomics , rna-seq , deseq2 , stringtie	5	1870	December 20, 2023
StringTie producing empty column for gene and transcript counts usegalaxy.org support troubleshooting , mapping , transcriptomics , reference-annotation , rna-seq , deseq2 , stringtie	9	458	December 21, 2023
fgsea of gene sets in .gmt does not provide any output transcriptomics , rna-seq	1	387	November 6, 2023
Smart-seq2 data analysis usegalaxy.org support mapping , tool-help , single-cell , rna-seq , rna_starsolo	2	616	November 2, 2023
Deseq2 analysis output too many DEGs usegalaxy.eu support transcriptomics , rna-seq , deseq2 , featurecounts	1	257	October 26, 2023
RNA-Seq analysis in Galaxy troubleshooting , mapping , transcriptomics , reference-annotation , rna-seq , featurecounts	12	732	December 21, 2023
Problem in DESe2 with multiple factors usegalaxy.eu support transcriptomics , rna-seq , deseq2	3	220	October 24, 2023
Basic Question - FPKM Count - What do I use as the reference gene model? troubleshooting , transcriptomics , reference-annotation , rna-seq , featurecounts	2	535	December 21, 2023
Fatal error: An undefined error occurred. transcriptomics , rna-seq , deseq2	1	245	October 17, 2023
Help with interpreting GO enrichment resutls using goseq transcriptomics , rna-seq , goseq	6	793	October 12, 2023
Question regarding goseq in RNA-SEQ tutorial gtn-tutorial , transcriptomics , rna-seq , goseq	2	351	September 28, 2023
"error in importRdata" using isoformswitchanalyzR usegalaxy.eu support gtn-tutorial , workflow , transcriptomics , rna-seq , stringtie	14	569	September 12, 2023
Assembly statistics in reference based RNA seq analysis_tools assembly , mapping , transcriptomics , rna-seq , deseq2 , stringtie	1	257	September 6, 2023
DESeq2 with pair end file (Stringtie) usegalaxy.org support transcriptomics , rna-seq , deseq2 , stringtie	1	206	September 5, 2023
annotateMyIDs (Galaxy Version 3.17.0+galaxy1) not working usegalaxy.org support mapping , transcriptomics , annotatemyids , rna-seq , featurecounts	2	342	August 31, 2023
Problem in "gffread Filters and/or converts GFF3/GTF2" troubleshooting , reference-annotation , rna-seq	2	314	December 21, 2023