Topics tagged rna-seq

Topic	Replies	Views	Activity
What file to use for Deseq2 and where to get it from usegalaxy.org support rna-seq , tutorial , tool-dev	3	171	March 19, 2021
Reference annotation GTF options for UCSC's mouse builds mm9, mm10 usegalaxy.eu support rna-seq , reference-annotation , gtf	4	331	March 18, 2021
errors when running Salmon data manager usegalaxy.org support rna-seq , admin , galaxy-local , error	0	240	March 18, 2021
How to calculate allelic imbalance in usegalaxy rna-seq , variant , freebayes , snp , usegalaxy	2	144	March 17, 2021
Indexing of reference genome usegalaxy.org support rna-seq , admin , workflow , tool-dev	0	101	March 16, 2021
Trinity, transcriptome assembly usegalaxy.org support rna-seq , trinity , transcriptomics	1	127	March 16, 2021
Issue regarding Upoading of the Genome in fasta file from NCBI usegalaxy.org support rna-seq , tutorial , galaxy-local , error	2	134	March 9, 2021
Fatal error: Exit code 1 () MultiQC and STAR erros usegalaxy.org support rna-seq , multiqc , error , rna-star , reference-genome	1	256	March 3, 2021
What tools should I use for Dual RNA-SEQ? usegalaxy.org support rna-seq	2	227	February 25, 2021
Kept seeing "Illegal stran" when using SAM/BAM to count matrix usegalaxy.org support rna-seq , troubleshooting , reference-annotation , gtf , reference-genome	8	218	February 12, 2021
RNA STAR alignment with SARS-COV-2 genome annotation - error message rna-seq , sars-cov-2	3	153	February 10, 2021
How to count reads in HET SNP position and ratio of two alleles in RNASeq data with usegalaxy rna-seq , snp , usegalaxy	0	105	February 7, 2021
HISAT2 reports samples with 0% alignment rates usegalaxy.org support rna-seq , mapping , hisat2	3	159	February 5, 2021
RNA-Seq Differential Expression Analysis usegalaxy.org support rna-seq , tutorial , deseq2 , htseq-count , edger	1	172	February 4, 2021
Compare variants between RNA-seq libraries usegalaxy.org support rna-seq , vcf , variant , bam	1	156	February 2, 2021
Machine learning based de novo assembly, alignment and annotation usegalaxy.eu support rna-seq , admin , tutorial , workflow , toolshed	0	144	January 28, 2021
Tool to use in place of Cuffdiff rna-seq , tutorial	15	322	January 25, 2021
Determining Coverage Percentage over Target Genome usegalaxy.org support rna-seq , rna-star	0	135	January 24, 2021
Detecting Novel Splice Variants with Kallisto usegalaxy.org support rna-seq , workflow , transcriptomics	0	128	January 20, 2021
Annotating variants from VCF (to later get variants per gene) without gtf/gff rna-seq , vcf , reference-annotation	1	121	January 17, 2021
Tophat vs HISAT2 usegalaxy.org support rna-seq , tophat , mapping , hisat2 , rna-star	2	246	January 11, 2021
Unable to use featurecounts tool rna-seq , featurecounts , bowtie2	2	403	January 9, 2021
Genome of interest not listed for using HISAT2 usegalaxy.org support rna-seq , hisat2 , reference-genome	7	276	December 27, 2020
Problem with recognizing adapters while using Cutadapt or Trimmomatic usegalaxy.org support rna-seq	2	203	December 16, 2020
RNA-Seq for the analysis of ribosomal RNA (rRNA) processing sites rna-seq , scrna-seq , rna-star , scrna , lncrna	6	232	December 7, 2020
To convert String tie GTF file to FASTA file rna-seq , assembly , trinity , stringtie , transcriptomics	1	599	November 20, 2020
How can I find that a RNAseq data is stranded or un-stranded by usegalaxy tools? usegalaxy.eu support rna-seq , tutorial , mapping , hisat2 , rna-star	3	350	November 17, 2020
Install Sartools usegalaxy.eu support rna-seq	0	133	October 15, 2020
FASTQC GC content fail: rRNA detection usegalaxy.org support rna-seq , fastqc	0	319	October 1, 2020
Check for strandedness usegalaxy.eu support rna-seq , qa-qc	2	538	September 9, 2020