Topics tagged rna-seq

Topic	Replies	Views	Activity
Table count Fatal error: Exit code 1 usegalaxy.org support rna-seq , tutorial	0	26	December 3, 2021
Too long waiting for collection trimming task then an error message usegalaxy.org support rna-seq , tutorial , error , public-galaxy-server	3	34	November 3, 2021
Ruvseq on galaxy rna-seq	2	45	November 3, 2021
Salmon quantification using Ensembl references usegalaxy.eu support rna-seq	4	59	October 21, 2021
generate count matrix from salmon output in galaxy usegalaxy.org support rna-seq	1	69	October 8, 2021
Bos taurus 9 as reference genome for Hisat2 usegalaxy.eu support rna-seq , admin	3	85	October 6, 2021
What can i do with genes that appear as NA but have statistics ? rna-seq , featurecounts , hisat2 , reference-annotation , gtf	4	96	September 28, 2021
What advanced parameters which need to be set for analysing ATAC seq replicates using edgeR in usegalaxy.org ? usegalaxy.org support rna-seq , tutorial , workflow , atac-seq	1	96	September 13, 2021
Cuffmerge does not merge to one GTF file -- Deprecated tool: consider alternative methods usegalaxy.org support rna-seq , cuffmerge , deprecated , tool-deprecated	1	103	September 9, 2021
dada2 piple line problem (Dereplication) rna-seq , admin , tutorial , public-galaxy-server	1	91	August 24, 2021
Glimmer3 results failed to convert to GFF3 - claiming a Metadata Error usegalaxy.org support rna-seq , workflow , error , public-galaxy-server , gff3	0	141	August 23, 2021
Trinotate error resulting in "The job creating this dataset has been resubmitted" usegalaxy.eu support rna-seq , job-config , trinity	10	451	August 11, 2021
how to annotate the output of kallisto in galaxy ? rna-seq , feature-annotation	0	77	August 11, 2021
Improve genome annotation with RNA-Seq data rna-seq , annotation	0	114	August 6, 2021
CUTADAPT GALAXY TUTORIAL_inserting adaptor sequence? usegalaxy.org support rna-seq , tutorial , qa-qc , cutadapt	2	129	July 23, 2021
Persistent error trying to run pipeline usegalaxy.eu support rna-seq , workflow , error	5	125	July 14, 2021
Unassigned Multimapping in featurecounts rna-seq , featurecounts , reference-annotation	9	3625	June 15, 2021
HISAT2 errors meaning usegalaxy.eu support rna-seq , error , fastq-deinterlacer , hisat2 , fastq-interlacer	9	1118	December 3, 2021
difference output differentially expressed genes by Cuffdiff, Deseq2, edgreR usegalaxy.org support rna-seq , deseq2 , cuffdiff , edger	1	130	May 23, 2021
Salmon Quantmerge rna-seq	1	114	May 21, 2021
The use of different built-in reference genomes -- Reference annotation + Reference genome for RNA-seq analysis usegalaxy.org support rna-seq , deseq2 , featurecounts , reference-annotation , gtf	4	133	May 20, 2021
DESeq2's output normalized usegalaxy.org support rna-seq , deseq2	2	215	May 18, 2021
Transcriptome tutorial files usegalaxy.eu support rna-seq , tutorial , public-galaxy-server	1	133	May 9, 2021
Trinotate running Error usegalaxy.org support rna-seq , admin , galaxy-local , error	2	199	May 3, 2021
DESEQ2 - How does it work? usegalaxy.org.au support rna-seq , deseq2	5	382	April 26, 2021
edgeR differential expression for replicates calculation rna-seq , htseq-count , edger	1	130	April 19, 2021
what tools approprite for remove duplicate reads from BAM file in Usegalaxy rna-seq , fastqc , bam , usegalaxy	3	222	April 19, 2021
Strandness option disappeared in Bowtie2 usegalaxy.org support rna-seq , bowtie2	1	112	April 15, 2021
Extracting transcripts from whole-transcriptome libraries rna-seq , vcf-filter	0	114	April 9, 2021
Old MultiQC version usegalaxy.eu support rna-seq	0	128	March 25, 2021