# \#sars-cov-2

**URL:** https://help.galaxyproject.org/tag/sars-cov-2/339.md

[Latest](https://help.galaxyproject.org/latest.md) · [Categories](https://help.galaxyproject.org/categories.md) · [Tags](https://help.galaxyproject.org/tags.md)

---

## [ARTIC Minion tool](https://help.galaxyproject.org/t/artic-minion-tool/9714)

<div class="topic-metadata">

**Author:** [@tbzh13](https://help.galaxyproject.org/u/tbzh13)\
**Replies:** 2\
**Last updated:** [March 25, 2023, 5:42pm UTC](https://help.galaxyproject.org/t/artic-minion-tool/9714 "2023-03-25T17:42:05Z")

</div>

Hello! I am trying to use the “ARTIC minion” tool on galaxy and even though I select different version of the ARTIC primers (from the drop down menu or bed files I upload) it still uses the V1 (when I open the log file i…

---

## [SARS-CoV-2 ARCTIC V4 files](https://help.galaxyproject.org/t/sars-cov-2-arctic-v4-files/7342)

<div class="topic-metadata">

**Author:** [@Kathleen\_Subramoney](https://help.galaxyproject.org/u/Kathleen_Subramoney)\
**Replies:** 22\
**Last updated:** [April 16, 2022, 9:01am UTC](https://help.galaxyproject.org/t/sars-cov-2-arctic-v4-files/7342 "2022-04-16T09:01:54Z")

</div>

Good day, Are there ARCTIC v4 amplicon info and v4 bed files to use for SARS-CoV-2 analysis. We recently started using the ARCTIC V4 primers. I had to try running the sequence data using the V3 primer set and bed on the…

---

## [Aligning Illumina RNAseq to SARS-CoV2 genome](https://help.galaxyproject.org/t/aligning-illumina-rnaseq-to-sars-cov2-genome/5854)

<div class="topic-metadata">

**Author:** [@genomcc](https://help.galaxyproject.org/u/genomcc)\
**Replies:** 2\
**Last updated:** [April 26, 2021, 1:17pm UTC](https://help.galaxyproject.org/t/aligning-illumina-rnaseq-to-sars-cov2-genome/5854 "2021-04-26T13:17:25Z")

</div>

Hi, I have RNAseq data (Illumina Total RNA) from whole blood RNA of COVID19 patients. Based on ddPCR, I think some have detectable virus in blood. The alignment to HG38 using HISAT2 is great, but when I substitute the S…

---

## [RNA STAR alignment with SARS-COV-2 genome annotation - error message](https://help.galaxyproject.org/t/rna-star-alignment-with-sars-cov-2-genome-annotation-error-message/5356)

<div class="topic-metadata">

**Author:** [@Ermela1](https://help.galaxyproject.org/u/Ermela1)\
**Replies:** 3\
**Last updated:** [February 10, 2021, 5:13pm UTC](https://help.galaxyproject.org/t/rna-star-alignment-with-sars-cov-2-genome-annotation-error-message/5356 "2021-02-10T17:13:06Z")

</div>

Hello, I am trying to align my rna seq data using RNA STAR and the GTF file i downloaded from NCBi. I tried a file from Genecode as well. The links are below ftp://ftp.ebi.ac.uk/pub/databases/gencode/covid19\_trackhub/…