Topics tagged scrna-seq

Topic	Replies	Views	Activity
Single-cell analysis-Seurat not working usegalaxy.org support tutorial , scrna-seq , scrna	1	64	October 30, 2023
Filter single cells by a specific gene in scRNAseq dataset using scanpy usegalaxy.org support scrna-seq	1	114	July 25, 2023
Nanopore data analysis by Galaxy usegalaxy.eu support scrna-seq , scrna	1	123	July 20, 2023
Scanpy Find Marker Genes groupby formatting usegalaxy.org support scrna-seq	6	215	June 21, 2023
fgsea and egsea tools usegalaxy.eu support workflow , scrna-seq , transcriptomics , scrna , rstudio	4	213	June 12, 2023
A question on single cell seq data analysis usegalaxy.org support tutorial , scrna-seq	2	139	May 17, 2023
How to use Seurat in Galaxy? tutorial , workflow , scrna-seq , scrna	1	214	May 17, 2023
Error of inspect anndata usegalaxy.eu support scrna-seq , scrna , anndata , hd5	9	254	October 6, 2022
Anndata Import Error with 0.8.0 scrna-seq , scrna , anndata , hd5	1	708	October 4, 2022
How to isolate and analyze subclusters from an initial scRNAseq cluster usegalaxy.org support scrna-seq , cluster	1	403	September 23, 2022
Not getting output from Inspect AnnData tool usegalaxy.eu support input , scrna-seq , scrna	3	289	September 21, 2022
Problem using Import Anndata tool usegalaxy.eu support input , scrna-seq	4	345	September 13, 2022
RNA-seq clustering of cell lines usegalaxy.org support tutorial , workflow , scrna-seq , transcriptomics	2	309	September 13, 2022
Make variable names unique usegalaxy.eu support scrna-seq , transcriptomics	3	252	September 17, 2022
Using Scanpy to process single cell data usegalaxy.eu support scrna-seq	4	260	July 19, 2022
Pre-processing of Single-Cell RNA Data Tutorial Troubleshooting tutorial , scrna-seq	5	315	July 23, 2022
Galaxy error "FATAL: container creation failed" usegalaxy.org support workflow , error , scrna-seq , rna-star	0	337	May 11, 2022
MiGMAP long run time usegalaxy.eu support scrna-seq	19	588	February 10, 2023
DESeq2 with single cell data - do cells from same sample get treated independently during analysis? usegalaxy.eu support deseq2 , scrna-seq	0	327	July 9, 2021
Seurat can not save outputs into rds or Rscript ? usegalaxy.org support scrna-seq , rscript	10	800	June 11, 2021
Best Galaxy tools/workflow to analyze scRNAseq Series Matrix from NIH GEO? scrna-seq	3	376	February 9, 2021
scRNAseq Galaxy workflow custom-genome , scrna-seq , reference-annotation , gtf , reference-genome	13	1785	December 11, 2020
RNA-Seq for the analysis of ribosomal RNA (rRNA) processing sites rna-seq , scrna-seq , rna-star , scrna , lncrna	6	514	December 7, 2020
DE analysis after StringTie tutorial , stringtie , scrna-seq , transcriptomics	1	475	December 2, 2020
single cell barcode extraction for STRT-seq usegalaxy.eu support scrna-seq , scrna	10	1117	November 30, 2020
Finding new transcripts in single-cell RNA-Seq datasets usegalaxy.eu support tutorial , workflow , scrna-seq , scrna	1	607	May 16, 2020
Analyse loom files from scRNA seq scrna-seq , loom , hdf5	2	1050	January 24, 2019