Topics tagged scrna-seq

Topic	Replies	Views	Activity
fgsea and egsea tools usegalaxy.eu support workflow , rstudio , scrna , transcriptomics , scrna-seq	3	23	June 9, 2023
A question on single cell seq data analysis usegalaxy.org support scrna-seq , tutorial	2	43	May 17, 2023
How to use Seurat in Galaxy? scrna-seq , workflow , tutorial , scrna	1	40	May 17, 2023
Error of inspect anndata usegalaxy.eu support scrna , hd5 , anndata , scrna-seq	9	158	October 6, 2022
Anndata Import Error with 0.8.0 hd5 , anndata , scrna , scrna-seq	1	465	October 4, 2022
How to isolate and analyze subclusters from an initial scRNAseq cluster usegalaxy.org support scrna-seq , cluster	1	177	September 23, 2022
Not getting output from Inspect AnnData tool usegalaxy.eu support scrna-seq , input , scrna	3	170	September 21, 2022
Problem using Import Anndata tool usegalaxy.eu support input , scrna-seq	4	187	September 13, 2022
RNA-seq clustering of cell lines usegalaxy.org support transcriptomics , scrna-seq , workflow , tutorial	2	165	September 13, 2022
Make variable names unique usegalaxy.eu support transcriptomics , scrna-seq	3	149	September 17, 2022
Using Scanpy to process single cell data usegalaxy.eu support scrna-seq	4	162	July 19, 2022
Pre-processing of Single-Cell RNA Data Tutorial Troubleshooting scrna-seq , tutorial	5	201	July 23, 2022
Galaxy error "FATAL: container creation failed" usegalaxy.org support error , rna-star , scrna-seq , workflow	0	247	May 11, 2022
MiGMAP long run time usegalaxy.eu support scrna-seq	19	478	February 10, 2023
DESeq2 with single cell data - do cells from same sample get treated independently during analysis? usegalaxy.eu support deseq2 , scrna-seq	0	276	July 9, 2021
Seurat can not save outputs into rds or Rscript ? usegalaxy.org support scrna-seq , rscript	10	649	June 11, 2021
Best Galaxy tools/workflow to analyze scRNAseq Series Matrix from NIH GEO? scrna-seq	3	301	February 9, 2021
scRNAseq Galaxy workflow custom-genome , scrna-seq , reference-annotation , gtf , reference-genome	13	1543	December 11, 2020
RNA-Seq for the analysis of ribosomal RNA (rRNA) processing sites lncrna , scrna , rna-star , scrna-seq , rna-seq	6	439	December 7, 2020
DE analysis after StringTie transcriptomics , tutorial , scrna-seq , stringtie	1	364	December 2, 2020
single cell barcode extraction for STRT-seq usegalaxy.eu support scrna , scrna-seq	10	866	November 30, 2020
Finding new transcripts in single-cell RNA-Seq datasets usegalaxy.eu support scrna , tutorial , workflow , scrna-seq	1	502	May 16, 2020
Analyse loom files from scRNA seq loom , hdf5 , scrna-seq	2	877	January 24, 2019