Topics tagged server-open-issue

Topic	Replies	Views	Activity
Kraken2 failing repeatedly ("This tool was disabled before the job completed.") -- Solution, use version 2.1.3+galaxy2 instead. Read here for how usegalaxy.org support usegalaxyorg , server-open-issue , kraken2	2	5	December 18, 2025
Map with KMA using the parameter "-t_db" is not clear! usegalaxy.eu support server-open-issue , tool-help , kma_map	11	98	November 6, 2025
Is the intersect tool working ? API error troubleshooting , data-manipulation , server-open-issue	3	27	October 4, 2025
Troubleshooting failed sequence alignment (Sanger) usegalaxy.eu support server-open-issue , qiime_align_seqs , qiime	4	13	October 3, 2025
Tcode (and other emboss programs) usegalaxy.eu support tool-dev , server-open-issue , tool-help , emboss	9	84	September 29, 2025
MrBayes - no output files found usegalaxy.eu support server-open-issue , tool-help , mrbayes	2	42	September 26, 2025
Repeatexplorer fails on single end input usegalaxy.eu support server-open-issue	13	69	September 25, 2025
Multiple Sequence Alignment is not interactive usegalaxy.eu support troubleshooting , server-open-issue , visualization	2	32	September 2, 2025
NCBI FCS GX fails (but used to run) usegalaxy.org support server-open-issue , ncbi_fcs_gx	4	98	August 6, 2025
Interactive BlobToolKit server-open-issue , tool-help , blobtoolkit , interactive_tool_blobtoolkit	4	58	July 14, 2025
Apollo Create or Update Organism error usegalaxy.eu support server-open-issue , tool-help , apollo	4	75	July 8, 2025
Cannot Preview BAM File on usegalaxy.org – "Unknown or invalid visualization: igv" usegalaxy.org support server-open-issue	6	118	June 12, 2025
Cannot "export history to file" usegalaxy.org support history-transfer , troubleshooting , server-open-issue	12	82	April 3, 2025
Unsharing shared histories usegalaxy.org support share-or-publish , server-open-issue	4	38	March 31, 2025
Gemini database installation crash server-admin , galaxy-local , troubleshooting , server-open-issue	6	43	March 17, 2025
troubles with footprinting tool usegalaxy.eu support server-open-issue , tool-help , footprint	6	51	February 19, 2025
featureCounts Fatal error: Exit code 127 () server-open-issue , featurecounts	6	113	January 8, 2025
PhyloseqR not showed up, not working server-open-issue , tool-help , interactive_tool_phyloseq , microgalaxy	13	116	November 19, 2024
problem with funannotate usegalaxy.eu support reference-index , server-open-issue , funannotate	3	697	June 1, 2023
EMBOSS program no graphic output usegalaxy.org support server-open-issue , emboss	4	36	September 24, 2025
StringeTie Generating Empty Transcript and Gene Counts usegalaxy.org support server-open-issue , stringtie	17	254	September 20, 2024
Updates for Kraken2 databases: Viruses and others reference-index , metagenomics , server-open-issue , kraken2	1	167	September 9, 2024
Map With BWA-MEM not working with one particular reference genome usegalaxy.org support reference-index , server-open-issue	5	215	August 30, 2024
psortb error on usegalaxy.eu usegalaxy.eu support troubleshooting , server-open-issue	10	175	August 2, 2024
Kraken2 databases mixed up reference-index , server-open-issue	16	689	June 24, 2024
bbtools:bbduk memory issue metagenomics , server-open-issue , exceeds-memory-error	4	246	May 23, 2024
Tutorial issues - De novo transcriptome assembly, annotation, and differential expression analysis. usegalaxy.eu support server-open-issue	3	157	April 19, 2024
Error using tool "Download and Extract Reads in FASTQ format from NCBI SRA" usegalaxy.org support ncbi , sra , server-open-issue	1	164	April 11, 2024
Dataset temporarily displaying as deleted - preventing job from running usegalaxy.org support troubleshooting , server-open-issue	8	170	March 14, 2024
RStudio 404 Error: February 2024 ~~Pending correction~~ Fixed! usegalaxy.org support troubleshooting , server-open-issue	3	331	September 17, 2024