Topics tagged snpeff

Topic	Replies	Views	Activity
Importing dbNSFP database usegalaxy.org support variant-analysis , snpeff	2	822	May 13, 2021
Which tool is guilty? Custom local Galaxy install server-admin , workflow , tool-dev , galaxy-local , transcriptomics , snpeff , rna_star	16	1078	April 29, 2021
Snpeff errors=numbers of variants process variant-analysis , snpeff	10	1597	April 9, 2021
SnpEff4.3 GRCh37.75: Which Ensemble Build is used? usegalaxy.eu support annotation , variant-analysis , snpeff	2	877	March 21, 2021
Why can't UCSC chain file imported into MiModD Rebase site tool? snpeff	2	409	December 29, 2020
How to restrict VCF variants using a gene list with the set function in SnpSift? server-admin , variant-analysis , snpeff	2	628	November 25, 2020
SnpEff annotation errors snpeff	1	896	August 26, 2020
SNpEff build Java error variant-analysis , snpeff	7	1680	December 22, 2023
Subsetting collections and doing operations on an arbitary number of groups usegalaxy.eu support workflow , collections , snpeff	9	957	July 1, 2020
regulatory_region_variant not reported in SnpEff annotation usegalaxy.eu support variant-analysis , snpeff	2	750	May 24, 2020
How to find the genes with the polymorphic variants in a VCF file usegalaxy.eu support snpeff	1	578	May 19, 2020
Alternative tool for split'N'trim usegalaxy.org support variant-analysis , snpeff , picard_markduplicates	0	431	May 17, 2020
adding tools 'SnpEff download' and 'SnpEff eff' on usegalaxy.eu usegalaxy.eu support server-admin , tool-install , snpeff	2	592	May 9, 2020
Fix a workflow for Variant calling from WGS data upon mutagenesis-screen snpeff , picard_markduplicates	2	658	May 1, 2020
Can not find the MimodD tool in Galaxy usegalaxy.org support snpeff	4	586	April 14, 2020
ANNOVAR alternative usegalaxy.eu support tool-deprecated , variant-analysis , snpeff	1	1175	April 8, 2020
How to add Triticum aestivum snpEff4.3 genome database or appropriate wheat genome database in Galaxy for VCF annotation? usegalaxy.org support snpeff	10	2284	March 30, 2020
SnpEff errors while trying to run the tool usegalaxy.org support annotation , vcf-filter , snpeff	3	1179	March 30, 2020
Annotate VCF with gene names usegalaxy.org support gtn-tutorial , tool-deprecated , variant-analysis , snpeff	3	3857	March 12, 2020
Snippy at Galaxy server fails to call SNPs from Fasta contigs usegalaxy.org support variant-analysis , snpeff	3	1016	December 22, 2023
Error in snpeff tool for download databae galaxy-local , variant-analysis , snpeff	5	2601	February 2, 2020
Snpeff eff error due to missing database version usegalaxy.org support snpeff	3	962	January 30, 2020
Missing the SnpEff in the "Calling variants in diploid systems" tutorial usegalaxy.eu support gtn-tutorial , variant-analysis , snpeff	2	658	January 29, 2020
download gnomad vcf.bgz.tbi dataset into galaxy variant-analysis , snpeff	9	2157	January 29, 2020
SnpEff annotation- transcript information discordant to the information available on the Ensemble website usegalaxy.eu support variant-analysis , snpeff	11	4030	January 29, 2020
Snpeff eff annotate Info field ends in the next vcf line usegalaxy.eu support variant-analysis , snpeff	3	976	November 17, 2019