Topics tagged spades

Topic	Replies	Views	Activity
Upload data directly into a collection! Solves: No compatible list of pairs dataset collections available spades	7	86	October 28, 2025
Resolving memory failures with SPAdes Resources spades , exceeds-memory-error , resources , tool-help	2	97	March 17, 2025
SPAdes error -- running out of memory/not enough memory allocated for job Resources spades , exceeds-memory-error , resources	1	522	June 6, 2024
fatal error running Shovil usegalaxy.org support assembly , spades , shovill	4	78	March 1, 2025
SPAdes taking 18+ hours to complete usegalaxy.eu support spades , queued-gray-datasets , server-status	4	134	February 14, 2025
Error in running Spades assembly usegalaxy.eu support assembly , spades , tool-help	4	235	February 11, 2025
How to analyze trimmed reads by Shovill Faster Spades Assembly tool Resources assembly , spades , resources , tool-help , shovill	2	169	October 31, 2024
Batch options for single end reads using SPades usegalaxy.eu support spades	8	150	October 22, 2024
N50 statistic for rnaviralSPades usegalaxy.eu support assembly , spades	2	64	July 10, 2024
Assembly of single-end and paired-end sequences assembly , spades , tool-help	5	254	May 13, 2024
exit error code 120 while running metaspade usegalaxy.org support assembly , spades	1	279	April 12, 2023
SPAdes assembly assembly , spades , queued-gray-datasets	2	486	March 29, 2023
SPAdes/Unicycler assembly failures -- Resolved usegalaxy.org support assembly , unicycler , spades	14	5649	February 10, 2023
Issue in SARS-COV2 Genome Assembly using SPAdes in usegalaxy.org usegalaxy.org support assembly , spades	3	463	December 21, 2023
Spades assembly fail - Memory error??? usegalaxy.org support spades , exceeds-memory-error	0	494	March 29, 2021
SPAdes, Unicycler, and Trinity have transitioned to run on the new Bridges-2 supercomputer usegalaxy.org support unicycler , spades , transcriptomics	1	480	February 10, 2023
rnaSPAdes ss flag usegalaxy.eu support spades , rnaspades	1	631	October 1, 2019