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Setup for Annovar
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4
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29
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March 21, 2025
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How to run MiXCR or AIRR-seq analysis
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3
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53
|
July 24, 2024
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Extract CuffDiff tool
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1
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119
|
February 8, 2024
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SRA-Toolkit Faster Download and Extract Reads in FASTQ: fasterq-dump: command not found
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5
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554
|
January 31, 2024
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Track height in trackster
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2
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260
|
November 20, 2023
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Trackster adding new tracks to visualisation
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5
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1466
|
November 20, 2023
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Trackster not loading dataset with server indexed "database" assigned
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4
|
742
|
November 20, 2023
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Convert VCF to pg_snp and gd_snp
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5
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601
|
April 13, 2023
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gatk picard index builder error
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4
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421
|
February 10, 2023
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Can't find Bowtie version1 in the tool boxes
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2
|
335
|
October 31, 2022
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An error of Trinity de novo assembly of RNA-seq data -- Disabled tool, use RNA-Spades instead
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5
|
547
|
July 23, 2022
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Tools update request
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3
|
381
|
February 10, 2023
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Is there anything available to replace the deprecated Genome Diversity tools
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5
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629
|
November 4, 2021
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annovar on galaxy v0.2 not working
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0
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517
|
October 7, 2021
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Cuffmerge does not merge to one GTF file -- Deprecated tool: consider alternative methods
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1
|
611
|
September 9, 2021
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Unable to use 'ANNOVAR Annotate VCF' to annotate my vcf file
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1
|
657
|
August 27, 2021
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Cuffdiff bam sort error
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1
|
499
|
April 13, 2021
|
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Unable to run Unicycler or ABySS
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3
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742
|
February 10, 2023
|
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ABySS fungal de novo genome assembly: Update, ABySS removed from usegalaxy.org, alternative usegalaxy.eu
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1
|
1292
|
January 13, 2021
|
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Galaxy error using Velveth error -- Deprecated tool suite: try SPAdes instead
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1
|
910
|
December 21, 2020
|
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Need help with selecting reference genome in Galaxy installed locally
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2
|
1237
|
December 1, 2020
|
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Project help...(variant analysis)
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1
|
2505
|
August 3, 2020
|
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getSpliced() error: improper genomic coordinate 46954453 on chrUn_random for TCONS_00084296
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2
|
1694
|
June 18, 2020
|
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Cuffmerge error: duplicate/invalid 'transcript' feature ID=Ma03_t01040.3
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3
|
1113
|
June 18, 2020
|
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Data paused and keep getting error: Tophat RNA data -- Tophat/Tophat2 Deprecated, use HISAT2
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1
|
769
|
May 8, 2020
|
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i got this error when i wanted to Evaluate the depth of coverage of the aligned region -- ALL GATK 1.4 tools are deprecated and should be avoided.
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5
|
949
|
April 23, 2020
|
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Error message when running 'Convert' tool under 'Genome Diversity' option -- All Genome Diversity tools are now deprecated and should be avoided
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3
|
809
|
April 22, 2020
|
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ANNOVAR alternative
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|
1
|
1188
|
April 8, 2020
|
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Annotate VCF with gene names
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|
3
|
3877
|
March 12, 2020
|
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Tophat not working??? - Deprecated tool, use HISAT2 instead
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|
6
|
1212
|
February 29, 2020
|