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Tools update request
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2
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71
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November 17, 2021
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Is there anything available to replace the deprecated Genome Diversity tools
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5
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74
|
November 4, 2021
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Cuffmerge does not merge to one GTF file -- Deprecated tool: consider alternative methods
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1
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102
|
September 9, 2021
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snippy tool update request
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3
|
127
|
July 9, 2021
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Cuffdiff bam sort error
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1
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126
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April 13, 2021
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Unable to run Unicycler or ABySS
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2
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200
|
January 13, 2021
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ABySS fungal de novo genome assembly: Update, ABySS removed from usegalaxy.org, alternative usegalaxy.eu
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1
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393
|
January 13, 2021
|
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Galaxy error using Velveth error -- Deprecated tool suite: try SPAdes instead
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1
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227
|
December 21, 2020
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getSpliced() error: improper genomic coordinate 46954453 on chrUn_random for TCONS_00084296
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2
|
469
|
June 18, 2020
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Cuffmerge error: duplicate/invalid 'transcript' feature ID=Ma03_t01040.3
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3
|
403
|
June 18, 2020
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HISAT2 and job stages, resources, PLAZA genomes, avoiding deprecated tools
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1
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186
|
May 19, 2020
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Data paused and keep getting error: Tophat RNA data -- Tophat/Tophat2 Deprecated, use HISAT2
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1
|
270
|
May 8, 2020
|
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i got this error when i wanted to Evaluate the depth of coverage of the aligned region -- ALL GATK 1.4 tools are deprecated and should be avoided.
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5
|
366
|
April 23, 2020
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Error message when running 'Convert' tool under 'Genome Diversity' option -- All Genome Diversity tools are now deprecated and should be avoided
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3
|
241
|
April 22, 2020
|
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Tophat not working??? - Deprecated tool, use HISAT2 instead
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6
|
408
|
February 29, 2020
|
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Cuffdiff--SQLite option is buggy for all versions or just for the latest one?!
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3
|
275
|
February 29, 2020
|
|
Cuff Suite Not Running -- Deprecated Tool Suite
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1
|
334
|
October 17, 2019
|
|
Galaxy GATK tool
|
|
1
|
652
|
October 4, 2019
|
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Unexpected failure when I perform cufflinks: Deprecated tool. Solution: Use current Differential Expression Tools, Workflows, Tutorials, FAQs
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2
|
500
|
August 31, 2019
|
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Tophat error for paired data analysis (deprecated tool)
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1
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430
|
April 19, 2019
|
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Having issue with exome sequencing - Deprecated tool (BWA for Illumina) in older workflow
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3
|
637
|
February 11, 2019
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