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An error of Trinity de novo assembly of RNA-seq data -- Disabled tool, use RNA-Spades instead
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4
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59
|
June 22, 2022
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Tools update request
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2
|
130
|
November 17, 2021
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Is there anything available to replace the deprecated Genome Diversity tools
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5
|
173
|
November 4, 2021
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Cuffmerge does not merge to one GTF file -- Deprecated tool: consider alternative methods
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1
|
178
|
September 9, 2021
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snippy tool update request
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3
|
177
|
July 9, 2021
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Cuffdiff bam sort error
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1
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188
|
April 13, 2021
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Unable to run Unicycler or ABySS
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2
|
292
|
January 13, 2021
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ABySS fungal de novo genome assembly: Update, ABySS removed from usegalaxy.org, alternative usegalaxy.eu
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1
|
561
|
January 13, 2021
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Galaxy error using Velveth error -- Deprecated tool suite: try SPAdes instead
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1
|
370
|
December 21, 2020
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getSpliced() error: improper genomic coordinate 46954453 on chrUn_random for TCONS_00084296
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2
|
615
|
June 18, 2020
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Cuffmerge error: duplicate/invalid 'transcript' feature ID=Ma03_t01040.3
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3
|
503
|
June 18, 2020
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|
HISAT2 and job stages, resources, PLAZA genomes, avoiding deprecated tools
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|
1
|
249
|
May 19, 2020
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Data paused and keep getting error: Tophat RNA data -- Tophat/Tophat2 Deprecated, use HISAT2
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1
|
353
|
May 8, 2020
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i got this error when i wanted to Evaluate the depth of coverage of the aligned region -- ALL GATK 1.4 tools are deprecated and should be avoided.
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5
|
463
|
April 23, 2020
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Error message when running 'Convert' tool under 'Genome Diversity' option -- All Genome Diversity tools are now deprecated and should be avoided
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|
3
|
291
|
April 22, 2020
|
|
Tophat not working??? - Deprecated tool, use HISAT2 instead
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|
6
|
517
|
February 29, 2020
|
|
Cuffdiff--SQLite option is buggy for all versions or just for the latest one?!
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|
3
|
352
|
February 29, 2020
|
|
Cuff Suite Not Running -- Deprecated Tool Suite
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|
1
|
412
|
October 17, 2019
|
|
Galaxy GATK tool
|
|
1
|
818
|
October 4, 2019
|
|
Unexpected failure when I perform cufflinks: Deprecated tool. Solution: Use current Differential Expression Tools, Workflows, Tutorials, FAQs
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|
2
|
633
|
August 31, 2019
|
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Tophat error for paired data analysis (deprecated tool)
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|
1
|
505
|
April 19, 2019
|
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Having issue with exome sequencing - Deprecated tool (BWA for Illumina) in older workflow
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|
3
|
727
|
February 11, 2019
|