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How to run MiXCR or AIRR-seq analysis
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3
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13
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July 24, 2024
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Extract CuffDiff tool
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1
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118
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February 8, 2024
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Track height in trackster
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2
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246
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November 20, 2023
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Trackster adding new tracks to visualisation
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5
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1451
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November 20, 2023
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Trackster not loading dataset with server indexed "database" assigned
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4
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736
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November 20, 2023
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Convert VCF to pg_snp and gd_snp
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5
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585
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April 13, 2023
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gatk picard index builder error
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4
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417
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February 10, 2023
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Can't find Bowtie version1 in the tool boxes
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2
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328
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October 31, 2022
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An error of Trinity de novo assembly of RNA-seq data -- Disabled tool, use RNA-Spades instead
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5
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533
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July 23, 2022
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Tools update request
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3
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381
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February 10, 2023
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Is there anything available to replace the deprecated Genome Diversity tools
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5
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623
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November 4, 2021
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Cuffmerge does not merge to one GTF file -- Deprecated tool: consider alternative methods
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1
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599
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September 9, 2021
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Cuffdiff bam sort error
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1
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485
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April 13, 2021
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Unable to run Unicycler or ABySS
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3
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738
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February 10, 2023
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ABySS fungal de novo genome assembly: Update, ABySS removed from usegalaxy.org, alternative usegalaxy.eu
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1
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1257
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January 13, 2021
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Galaxy error using Velveth error -- Deprecated tool suite: try SPAdes instead
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1
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903
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December 21, 2020
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getSpliced() error: improper genomic coordinate 46954453 on chrUn_random for TCONS_00084296
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2
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1584
|
June 18, 2020
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Cuffmerge error: duplicate/invalid 'transcript' feature ID=Ma03_t01040.3
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3
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1095
|
June 18, 2020
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Data paused and keep getting error: Tophat RNA data -- Tophat/Tophat2 Deprecated, use HISAT2
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1
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762
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May 8, 2020
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i got this error when i wanted to Evaluate the depth of coverage of the aligned region -- ALL GATK 1.4 tools are deprecated and should be avoided.
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5
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938
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April 23, 2020
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Error message when running 'Convert' tool under 'Genome Diversity' option -- All Genome Diversity tools are now deprecated and should be avoided
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3
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806
|
April 22, 2020
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Tophat not working??? - Deprecated tool, use HISAT2 instead
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6
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1190
|
February 29, 2020
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Cuffdiff--SQLite option is buggy for all versions or just for the latest one?!
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4
|
833
|
October 13, 2022
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Trackster not adding multiple datasets
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3
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917
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February 10, 2023
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Cuff Suite Not Running -- Deprecated Tool Suite
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1
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787
|
October 17, 2019
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Galaxy GATK tool
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1
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1531
|
October 4, 2019
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Unexpected failure when I perform cufflinks: Deprecated tool. Solution: Use current Differential Expression Tools, Workflows, Tutorials, FAQs
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2
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1180
|
August 31, 2019
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Tophat error for paired data analysis (deprecated tool)
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1
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971
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April 19, 2019
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Having issue with exome sequencing - Deprecated tool (BWA for Illumina) in older workflow
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3
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1291
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February 11, 2019
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