Topics tagged tool-help

Topic	Replies	Views	Activity
Adding Custom PTM Modification in Maxquant Galaxy Tool Configuration usegalaxy.eu support tool-help , maxquant	2	15	March 10, 2026
Trimmomatic - MINLEN Default Value usegalaxy.org support tool-help , trimmomatic	2	36	March 5, 2026
Dada2: assignTaxonomy and addSpecies tool-help	4	34	March 2, 2026
UMI-tools deduplicate tool-help , umi_tools_dedup	6	19	March 2, 2026
Please help me fix the Snippy error usegalaxy.org support tool-help , snippy	1	15	March 1, 2026
iPHoP 1.4.2 – Cannot select database usegalaxy.eu support troubleshooting , tool-help , iphop_predict	3	15	February 27, 2026
featureCounts not giving single count files from multiple BAm files usegalaxy.org support tool-help , featurecounts	1	9	February 25, 2026
Shovill producing blank contig graph file: Use Galaxy Version 1.1.0+galaxy2 usegalaxy.eu support troubleshooting , tool-help , shovill	7	34	February 25, 2026
Qiime2 Import 2025.10 errors: Standardize your fastq sequence names usegalaxy.eu support resources , tool-help , qiime2_core__tools__import	7	98	February 25, 2026
qiime2 tools import collections , tool-help , qiime2 , qiime2_core__tools__import , collection-shape	8	636	February 25, 2026
Can't make miRDeep2 Quantifier work usegalaxy.org support troubleshooting , tool-help , rbc_mirdeep2 , rbc_mirdeep2_mapper , rbc_mirdeep2_quantifier	3	13	February 20, 2026
Deepvariant analysis failed to complete: How to confirm reference genome choices usegalaxy.org support tool-help , deepvariant	2	20	February 20, 2026
PLINK bed/bim/fam files are only downloadable as html/tabular/text files usegalaxy.eu support datatype , tool-help , plink	3	19	February 16, 2026
BWA-MEM2 input file naming usegalaxy.org support custom-genome , igv , tool-help , bwa_mem2	2	21	February 13, 2026
Extract Genomic DNA error box usegalaxy.eu support resources , tool-help , bedtools_getfastabed , extract-genomic-dna-1 , extract_genomic_dna	8	32	February 9, 2026
HUMAnN-setting-error usegalaxy.eu support tool-help , humann	1	23	February 7, 2026
Distance Analysis - time series using MDAnalysis (Galaxy Version 1.0.0+galaxy0) tool inputs usegalaxy.eu support troubleshooting , comp-chemistry , tool-help , mdanalysis_distance	2	22	February 5, 2026
Text reformatting - outdated link tool-help , tp_awk_tool	5	54	February 5, 2026
A tool that's not available on Galaxy EU usegalaxy.eu support tool-help	1	49	February 4, 2026
IT fails to start usegalaxy.org support tool-help	2	26	February 4, 2026
Toubleshooting BiG-Scape output usegalaxy.eu support tool-help , bigscape	4	85	March 17, 2026
Add Sample to LoFreq VCF file gtn-tutorial , tool-help , variant-analysis , lofreq_call , lofreq_filter , lofreq_alnqual , lofreq_viterbi , iwc-workflows	5	24	February 2, 2026
GROMACS simulation thread allocation usegalaxy.eu support tool-help , gromacs	1	16	February 2, 2026
SnpEff eff (version 5.2) usegalaxy.org support troubleshooting , tool-help , snpeff	7	64	January 28, 2026
Filtering VEP annotated VCF file tool-help , bcftools_plugin_split_vep	3	45	January 27, 2026
IQ-TREE concordance factor outputs not collected as separate datasets usegalaxy.eu support tool-help , iqtree	3	55	January 23, 2026
Bedtools Intersect intervals results interpretation usegalaxy.eu support bedtools , tool-help , bedtools_intersectbed	5	52	January 23, 2026
Missing Pfam-A reference data in Galaxy PfamScan reference-index , tool-help , pfamscan	1	22	January 23, 2026
MMPBSA/MMGBSA tool-help usegalaxy.eu support tool-help , mmpbsa_mmgbsa	2	62	January 23, 2026
GffCompare problem producing a combined gtf usegalaxy.eu support tool-help	1	27	January 22, 2026