Topics tagged tool-help

Topic	Replies	Views	Activity
Problem retrieving data from Apollo troubleshooting , tool-help , apollo , iframe , apollo_iframe , list_organism , feat_from_gff3 , delete_features , fetch_jbrowse	6	34	May 13, 2026
Fastp was disabled before the job completed usegalaxy.org support server-open-issue , tool-help , fastp	1	33	May 11, 2026
Job not starting? NCBI FCS GX queue timing explained usegalaxy.eu support queued-gray-datasets , tool-help , ncbi_fcs_gx	4	73	May 9, 2026
GeneMark in Funnanotate Predict usegalaxy.eu support tool-help , funannotate_predict , genemark	1	55	May 7, 2026
DESeq2 factors and factor level Input usegalaxy.eu support troubleshooting , transcriptomics , tool-help , deseq2	4	79	May 5, 2026
Error while running GoSeq after cut the required columns and preparing the DE and Length files usegalaxy.org.au support workflow , tool-help , goseq	1	31	May 1, 2026
Cut Issue Related to Metagenomic usegalaxy.org support queued-gray-datasets , tool-help , cut1	1	23	April 30, 2026
Issue with extracting datasets from unzipped files containing .gitkeep files usegalaxy.eu support troubleshooting , tool-help , unzip , zip-explorer	6	90	April 30, 2026
KOfam database (HMM profiles of KEGG Orthologs): licensing and KEGG tool-help , kegg-index-license , licence , kofamscan	1	75	April 29, 2026
Kraken2 databases question reference-index , tool-help , kraken2	1	34	April 29, 2026
Unfold bug, missing newline char text-manipulation , tool-help , tp_unfold_column_tool	3	44	April 27, 2026
Panaroo error - missing dependancies? usegalaxy.org.au support troubleshooting , tool-help , panaroo	8	160	April 27, 2026
Panaroo error with GFF3 input TIP: include .gff in the file names and collection identifiers usegalaxy.eu support tool-help , panaroo	1	95	April 26, 2026
Stuck in queue SPAdes usegalaxy.org support spades , tool-help	1	46	April 24, 2026
Hyperparameter search missing option usegalaxy.org support gtn-tutorial , tool-help , sklearn_searchcv	3	39	April 24, 2026
IQ-TREE configuration: consensus tree creation with 5 newick tree files usegalaxy.eu support tool-help , phylogeny , iqtree	10	121	April 22, 2026
Issue at RNA-STAR step: adjusting GTF annotation usegalaxy.org support mapping , transcriptomics , tool-help , rna_star	3	62	April 22, 2026
Error while running metaspades usegalaxy.org support assembly , tool-help , metaspades	2	324	April 18, 2026
How to use MEGAHIT assembly , metagenomics , tool-help , megahit	2	180	April 18, 2026
'Extract Pairwise MAF Blocks' unable to detect .maf file usegalaxy.org support tool-help , interval2maf_pairwise1 , maf-manipulations	2	58	April 18, 2026
chewBBACA DownloadSchema Schema files - organisms are mixed up usegalaxy.eu support tool-help , chewbbaca_downloadschema	4	53	April 9, 2026
Trinotate SQLite boilerplate unavailable on usegalaxy.eu? usegalaxy.eu support tool-deprecated , tool-help , trinotate	4	186	April 8, 2026
Deprecated tool: Trinonate. See GTN Transcriptomics tutorials for alternatives tool-deprecated , tool-help , trinotate	2	161	April 8, 2026
Bakta output option for a GenBank file is tabular only, not gbff tool-help , bakta	2	100	April 8, 2026
Help using PICRUSt2 pipeline? usegalaxy.eu support tool-help , add_a_column1 , picrust2_pipeline	5	88	April 6, 2026
Ouput unaligned reads into bam file with hisat2 usegalaxy.eu support mapping , transcriptomics , tool-help , hisat2	1	33	March 18, 2026
Missing genes in eggNOG-mapper output: How to explore results across processing steps usegalaxy.eu support resources , tool-help , eggnog_mapper_search , eggnog_mapper , eggnog_mapper_annotate	3	138	March 16, 2026
GOEnrichment support usegalaxy.eu support tool-help , goenrichment	1	20	March 13, 2026
MITOS2 missing reference data usegalaxy.eu support tool-help , mitos2	1	19	March 13, 2026
Align structures and compute relative RMSDs tool-help , biopdb_align_and_rmsd	1	11	March 12, 2026