Topics tagged tool-help

Topic	Replies	Views	Activity
Dada2: removeBimeraDenovo job runtime benchmarking usegalaxy.eu support queued-gray-datasets , tool-help , dada2_removebimeradenovo	1	27	October 9, 2025
Panaroo & PanTA: sample recognition troubleshooting usegalaxy.eu support collections , tool-help	4	39	October 8, 2025
“Can you please make the latest Human (GRCh38/hg38 or hg19) reference genome usegalaxy.org support tool-help , rna_starsolo	2	35	October 8, 2025
How to find the reference transcriptome for analysis tools: GRCh38/hg38 example Resources troubleshooting , reference-annotation , reference-genome , resources , tool-help , reference-transcriptome , salmon , kallisto_quant	3	662	May 16, 2024
Cannot find the custom genome "Fly (Drosophila melanogaster): dm6 Full" usegalaxy.eu support tool-help , bedtools_genomecoveragebed	1	10	October 2, 2025
Collection folder VIDEO: How to create a single or paired end dataset collection folder (shapes and organization) Resources collections , resources , tool-help , metawrapmg_binning	3	37	September 29, 2025
Missing "paired" input for fastp tool Resources tool-dev , resources , tool-help , fastp	8	175	February 24, 2025
Genome annotation statistics error usegalaxy.org support tool-help , jcvi_gff_stats	5	19	September 30, 2025
Tcode (and other emboss programs) usegalaxy.eu support tool-dev , server-open-issue , tool-help , emboss	9	69	September 29, 2025
MrBayes - no output files found usegalaxy.eu support server-open-issue , tool-help , mrbayes	2	36	September 26, 2025
2025 Update! Convert Genome Coordinates? Avoid :warning: Liftover and try using CrossMap Resources liftover , tool-help , crossmap	2	45	September 25, 2025
Issue with extracting datasets from unzipped files containing .gitkeep files usegalaxy.eu support troubleshooting , tool-help , unzip , zip-explorer	5	32	September 23, 2025
Mitos2 Erorr, cant processing submitted usegalaxy.eu support tool-help , mitos2	5	18	September 23, 2025
Trimmomatic Output 4 Files? usegalaxy.eu support tool-help , trimmomatic	1	36	September 22, 2025
DRAM distill: Error while running usegalaxy.eu support troubleshooting , metagenomics , tool-help	5	46	September 22, 2025
Reference genome from the history tool-help , bowtie2	2	30	September 22, 2025
MultiQC Fastqc problems usegalaxy.eu support workflow , multiqc , tool-help	1	4	September 22, 2025
Kraken2 Not supporting the required formats for paired sequencing Resources tool-help , kraken2	1	29	September 8, 2025
CREx_rearrangement scenario Resources tool-help , revoluzer_crex	5	32	September 4, 2025
Removing PCR duplicates in GStacks2 Resources tool-help , stacks2_gstacks	2	19	October 18, 2025
MITOS2 error can't run job Resources tool-help , mitos2	3	38	August 29, 2025
Convert GTF to BED12 Resources tool-help , gtftobed12	1	25	August 28, 2025
DADA2 Merge Pairs troubleshooting Resources tool-help , dada2_mergepairs	1	23	August 27, 2025
MaAsLin2 job fails due to glmmTMB / TMB version mismatch Resources troubleshooting , tool-help , maaslin2	2	10	August 21, 2025
Flye giving error with bacterial genome Resources assembly , tool-help	1	24	August 21, 2025
Issue with rnaQUAST tool Resources transcriptomics , tool-help , rna_quast	27	116	August 19, 2025
Funannotate Predict failure re Permission denied? Choose 1.8.15+galaxy5 instead for now Resources tool-install , galaxy-local , tool-help , funannotate_predict	4	87	August 19, 2025
Free energy landsape using Bio3d in galaxy Resources comp-chemistry , tool-help , bio3d_pca	5	50	August 18, 2025
Question about UMI-tools extract: different version from the tutorial? Resources tool-help , umi_tools_extract	3	44	August 13, 2025
mergePreClusterReads in LotuS2 Resources tool-help	3	24	August 12, 2025