# \#tool-version **URL:** https://help.galaxyproject.org/tag/tool-version/16.md [Latest](https://help.galaxyproject.org/latest.md) · [Categories](https://help.galaxyproject.org/categories.md) · [Tags](https://help.galaxyproject.org/tags.md) --- ## [Use GTDB-Tk database: Navigating tool versions](https://help.galaxyproject.org/t/use-gtdb-tk-database-navigating-tool-versions/17389)
**Author:** [@Laurapbt](https://help.galaxyproject.org/u/Laurapbt)\ **Replies:** 1\ **Last updated:** [January 30, 2026, 11:43pm UTC](https://help.galaxyproject.org/t/use-gtdb-tk-database-navigating-tool-versions/17389 "2026-01-30T23:43:41Z")
I would like to know how to perform a BLAST alignment between a genome uploaded to Galaxy and a reference genome also uploaded by me. I can’t use the GTDB-Tk Database tool because it says: “This version of GTDB-Tk requir… --- ## [Latest DESeq2 version (2.11.40.8+galaxy0) gives different result than earlier versions](https://help.galaxyproject.org/t/latest-deseq2-version-2-11-40-8-galaxy0-gives-different-result-than-earlier-versions/14846)
**Author:** [@jmt](https://help.galaxyproject.org/u/jmt)\ **Replies:** 3\ **Last updated:** [February 26, 2025, 7:09pm UTC](https://help.galaxyproject.org/t/latest-deseq2-version-2-11-40-8-galaxy0-gives-different-result-than-earlier-versions/14846 "2025-02-26T19:09:23Z")
I have observed that the latest version of DESeq2 (2.11.40.8+galaxy0) produces results considerably different compared with earlier versions (such as 2.11.40.7+galaxy0 to 2 and 2.11.40.6+galaxy1 to 2) from the same count… --- ## [Other versions for GROMACS](https://help.galaxyproject.org/t/other-versions-for-gromacs/9354)
**Author:** [@desire\_mtetwa](https://help.galaxyproject.org/u/desire_mtetwa)\ **Replies:** 1\ **Last updated:** [April 14, 2023, 12:03am UTC](https://help.galaxyproject.org/t/other-versions-for-gromacs/9354 "2023-04-14T00:03:41Z")
Hello, I was wondering if it is possible to have other versions for GROMACS production simulation. Available versions are 2018.2 and 2019.1 and I really need to use version 2021.4 Thank you --- ## [Proteogenomics db search tutorial Search GUI Identification Parameters file not available](https://help.galaxyproject.org/t/proteogenomics-db-search-tutorial-search-gui-identification-parameters-file-not-available/7984)
**Author:** [@nirvtul](https://help.galaxyproject.org/u/nirvtul)\ **Replies:** 2\ **Last updated:** [March 22, 2023, 8:30pm UTC](https://help.galaxyproject.org/t/proteogenomics-db-search-tutorial-search-gui-identification-parameters-file-not-available/7984 "2023-03-22T20:30:16Z")
Hello, I’m working on the Proteogenomics 2: Database Search tutorial and am on the Search GUI step. The Search GUI tool (Version 4.0.41) in the usegalaxy.eu instance, seems to require an additional input: Identificatio… --- ## [Different versions of trimmomatic gives different output](https://help.galaxyproject.org/t/different-versions-of-trimmomatic-gives-different-output/4728)
**Author:** [@bee](https://help.galaxyproject.org/u/bee)\ **Replies:** 0\ **Last updated:** [October 28, 2020, 9:55am UTC](https://help.galaxyproject.org/t/different-versions-of-trimmomatic-gives-different-output/4728 "2020-10-28T09:55:57Z")
I’m getting different outputs with the same input using the exact same tool of different versions. I have used Trimmomatic version 0.36.5 on usegalaxy.eu and Trimmomatic version 0.38.0 on usegalaxy.org. I used the same … --- ## [Mpileup with vcf output? How to change galaxy to older version?](https://help.galaxyproject.org/t/mpileup-with-vcf-output-how-to-change-galaxy-to-older-version/132)
**Author:** [@Natalia\_Echeverria](https://help.galaxyproject.org/u/Natalia_Echeverria)\ **Replies:** 3\ **Last updated:** [December 6, 2018, 4:18pm UTC](https://help.galaxyproject.org/t/mpileup-with-vcf-output-how-to-change-galaxy-to-older-version/132 "2018-12-06T16:18:54Z")
Hello, The “mpileup” tool that gives an output file in vcf format is not available in usegallaxy.org. However I read a post on biostar (https://biostar.usegalaxy.org/p/29664/) stating that previous versions had it and t…