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Trimming with different parameters/tools give vastly different end results.
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1
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3
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February 21, 2025
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DESeq2 or EdgeR or Limma without replication
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9
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4764
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February 14, 2025
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I can not get counts
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5
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9
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January 31, 2025
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Feature count on exon level instead gene level
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3
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15
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January 28, 2025
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Issues with using a reference transcriptome in kallisto quant
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1
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16
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January 28, 2025
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How to get galaxy to call transcript types from gene symbols?
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1
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14
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January 15, 2025
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Global change in splicing
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3
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14
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January 15, 2025
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DESeq2 input is non-featurecounts
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1
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17
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January 14, 2025
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goseq for Top over−represented & under-represented GO terms plot
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2
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13
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December 13, 2024
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Determining Primary, Intermediate, and Mature Mitochondrial Transcripts??
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1
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4
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December 9, 2024
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Salmonquant didnot work using my Reference transcriptome
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2
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19
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December 9, 2024
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Faster download FASTQ from NCBI SRA_ERROR
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3
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27
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November 6, 2024
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trouble with goseq
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5
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23
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November 4, 2024
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hisat2 and featurecounts
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23
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2012
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October 28, 2024
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Feature counts built-in annotation file - no options available
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2
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72
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October 28, 2024
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jobs running too slow
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2
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27
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October 25, 2024
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Is CD-HIT-EST no longer available?
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1
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22
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October 20, 2024
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sudden change in STAR alignment of RNA-seq data
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1
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21
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October 17, 2024
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Normalizing RNA-seq with RUVIII - PRPS
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2
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33
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October 16, 2024
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How to get log fold change for individual samples?
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5
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232
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October 16, 2024
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reference genome for STARsolo
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3
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33
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December 4, 2024
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How to get LogFC from Log2(FC)
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3
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24
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October 7, 2024
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issues with sortmeNRA
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1
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20
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September 27, 2024
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SortMeRNA not working following the Metatranscriptomic Workflow Tutorial
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5
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51
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September 24, 2024
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StringTie gene count files have different row numbers
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11
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74
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September 23, 2024
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Optimizing STAR Mapping for Large-Scale Genome Annotation: Managing Memory Overflows in RNA-Seq Workflows
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6
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38
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September 10, 2024
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Goseq NA NA NA NA values
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13
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79
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September 8, 2024
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Error running edgeR
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4
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48
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September 3, 2024
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Error when running DeSeq2: help resources and input strategies
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3
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180
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August 30, 2024
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How to obtain FASTA sequence after mapping RNA-Seq file
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1
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65
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August 29, 2024
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