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Assembly statistics in reference based RNA seq analysis_tools
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1
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263
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September 6, 2023
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Asking for unmapped genes in RNA sequencing via Galaxy
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1
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9
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August 25, 2025
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Help with RNA Star, Featurecounts, and reference annotation choices
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1
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24
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August 19, 2025
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Issue with rnaQUAST tool
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27
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90
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August 19, 2025
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Problem with STARsolo chimeric alignments output as separate tabular junctions in Galaxy
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1
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9
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August 5, 2025
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Heatmap2: which transformations does the tool apply before plotting my data?
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2
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26
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July 23, 2025
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Mapping RNAseq reads to Brachypodium distachyon genome
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2
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23
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July 23, 2025
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Annotate DESeq2/DEXSeq tool error
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10
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63
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July 22, 2025
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How can I create a heatmap from DEG analysis of three treatment groups?
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1
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63
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July 1, 2025
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Error with running EGSEA
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1
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16
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June 14, 2025
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sortmeRNA creating identical aligned and unaligned files?
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2
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21
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June 10, 2025
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Problem with "featurecounts" after MACS2 call peak for ATAC-seq analysis
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1
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26
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June 2, 2025
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DEseq analysis on featurecounts from two chromosomes of the same genome
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2
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23
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May 27, 2025
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uploading metadata file
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2
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12
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May 22, 2025
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Error reported for fgsea - gene set enrichment tool
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1
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23
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May 16, 2025
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RNA-Star FeatureCount error for REF RNA-seq training
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1
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15
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May 16, 2025
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HISAT2 and RNA STAR reference genomes
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2
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25
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April 25, 2025
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IsoformSwitchAnalyzeR Import Data: Memory Allocation
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6
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36
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April 25, 2025
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RUVSeq:Fatal error: An undefined error occurred, please check your input carefully and contact your administrator
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1
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10
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April 18, 2025
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Adding a reference genome to map RNAseq contig
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1
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20
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April 16, 2025
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Linking mouse gene IDs/name to Encode IDs following Salmon and DESeq analysis
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3
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32
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July 22, 2025
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Error with FeatureCounts
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5
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59
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April 14, 2025
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need help with Falco tool
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2
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33
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April 9, 2025
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Error with HISAT2
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3
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25
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April 3, 2025
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Latest DESeq2 version (2.11.40.8+galaxy0) gives different result than earlier versions
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3
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71
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February 26, 2025
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Trimming with different parameters/tools give vastly different end results.
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2
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120
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February 25, 2025
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DESeq2 or EdgeR or Limma without replication
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9
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4962
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February 14, 2025
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I can not get counts
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5
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30
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January 31, 2025
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Feature count on exon level instead gene level
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4
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114
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July 22, 2025
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Issues with using a reference transcriptome in kallisto quant
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1
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40
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January 28, 2025
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