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Asking for unmapped genes in RNA sequencing via Galaxy
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1
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31
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August 25, 2025
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Help with RNA Star, Featurecounts, and reference annotation choices
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1
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177
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August 19, 2025
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GTN Transcriptomics Hands-on: Genome-wide alternative splicing analysis. Troubleshooting reference data choices!
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27
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344
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August 19, 2025
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Problem with STARsolo chimeric alignments output as separate tabular junctions in Galaxy
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1
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39
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August 5, 2025
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Heatmap2: which transformations does the tool apply before plotting my data?
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3
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82
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April 8, 2026
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Mapping RNAseq reads to Brachypodium distachyon genome
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2
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53
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July 23, 2025
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Annotate DESeq2/DEXSeq tool error
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10
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153
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July 22, 2025
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Error with running EGSEA
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1
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47
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June 14, 2025
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sortmeRNA creating identical aligned and unaligned files?
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2
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76
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June 10, 2025
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Problem with "featurecounts" after MACS2 call peak for ATAC-seq analysis
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1
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64
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June 2, 2025
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DEseq analysis on featurecounts from two chromosomes of the same genome
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2
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55
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May 27, 2025
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uploading metadata file
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3
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57
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April 7, 2026
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Error reported for fgsea - gene set enrichment tool
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1
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70
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May 16, 2025
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RNA-Star FeatureCount error for REF RNA-seq training
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2
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49
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April 9, 2026
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HISAT2 and RNA STAR reference genomes
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2
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53
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April 25, 2025
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IsoformSwitchAnalyzeR Import Data: Memory Allocation
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6
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96
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April 25, 2025
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RUVSeq:Fatal error: An undefined error occurred, please check your input carefully and contact your administrator
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1
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37
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April 18, 2025
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Adding a reference genome to map RNAseq contig
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1
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39
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April 16, 2025
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Linking mouse gene IDs/name to Encode IDs following Salmon and DESeq analysis
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3
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82
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July 22, 2025
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Error with FeatureCounts
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5
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121
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April 14, 2025
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need help with Falco tool
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2
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77
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April 9, 2025
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Error with HISAT2
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3
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54
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April 3, 2025
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Latest DESeq2 version (2.11.40.8+galaxy0) gives different result than earlier versions
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3
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125
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February 26, 2025
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Trimming with different parameters/tools give vastly different end results.
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2
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313
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February 25, 2025
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DESeq2 or EdgeR or Limma without replication
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9
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5128
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February 14, 2025
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I can not get counts
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5
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92
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January 31, 2025
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Feature count on exon level instead gene level
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4
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211
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July 22, 2025
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Issues with using a reference transcriptome in kallisto quant
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1
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93
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January 28, 2025
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How to get galaxy to call transcript types from gene symbols?
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1
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42
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January 15, 2025
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Global change in splicing
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4
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97
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March 17, 2026
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