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Genome wide alternate splicing analysis - IsoformSwitchAnalyzeR error from StringTie input - no CDS
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9
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381
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August 7, 2024
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Using CHM13v2.0 T2T and mm39 gene annotations for RNASeq Analysis
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3
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307
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December 3, 2025
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Is a "?" in featureCounts' database field a problem when using a non-built-in genome?
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1
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82
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November 24, 2025
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miRNA alignment on Bowtie2/miRDeep
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1
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91
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November 15, 2025
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[Beginner Question] Identifying Gene ID vs Protein ID
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1
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104
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November 11, 2025
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BAM/SAM Mapping Stats
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1
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66
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November 3, 2025
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Suggestions for Reliable Alternative Splicing Workflow in Galaxy?
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1
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57
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October 27, 2025
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Download and Extract reads in FASTQ format from NCBI SRA in workflow issue
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5
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407
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October 27, 2025
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Memory error with rnaSPAdes? Try QA/QC and Sub-sample sequences
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1
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94
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September 30, 2025
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Assembly statistics in reference based RNA seq analysis_tools
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1
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332
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September 6, 2023
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Asking for unmapped genes in RNA sequencing via Galaxy
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1
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49
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August 25, 2025
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Help with RNA Star, Featurecounts, and reference annotation choices
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1
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272
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August 19, 2025
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GTN Transcriptomics Hands-on: Genome-wide alternative splicing analysis. Troubleshooting reference data choices!
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27
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616
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August 19, 2025
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Problem with STARsolo chimeric alignments output as separate tabular junctions in Galaxy
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1
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56
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August 5, 2025
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Heatmap2: which transformations does the tool apply before plotting my data?
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2
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126
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July 23, 2025
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Mapping RNAseq reads to Brachypodium distachyon genome
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2
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80
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July 23, 2025
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Annotate DESeq2/DEXSeq tool error
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9
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217
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July 22, 2025
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Error with running EGSEA
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1
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81
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June 14, 2025
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sortmeRNA creating identical aligned and unaligned files?
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2
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112
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June 10, 2025
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Problem with "featurecounts" after MACS2 call peak for ATAC-seq analysis
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1
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78
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June 2, 2025
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DEseq analysis on featurecounts from two chromosomes of the same genome
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2
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81
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May 27, 2025
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uploading metadata file
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2
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98
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May 22, 2025
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Error reported for fgsea - gene set enrichment tool
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1
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110
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May 16, 2025
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RNA-Star FeatureCount error for REF RNA-seq training
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1
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65
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May 16, 2025
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HISAT2 and RNA STAR reference genomes
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2
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75
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April 25, 2025
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IsoformSwitchAnalyzeR Import Data: Memory Allocation
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6
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126
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April 25, 2025
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RUVSeq:Fatal error: An undefined error occurred, please check your input carefully and contact your administrator
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1
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52
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April 18, 2025
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Adding a reference genome to map RNAseq contig
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1
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51
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April 16, 2025
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Linking mouse gene IDs/name to Encode IDs following Salmon and DESeq analysis
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2
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116
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April 16, 2025
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Error with FeatureCounts
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5
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184
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April 14, 2025
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