Topics tagged transcriptomics

Topic	Replies	Views	Activity
Normalizing RNA-seq with RUVIII - PRPS transcriptomics , tool-help , ruvseq	2	92	October 16, 2024
How to get log fold change for individual samples? usegalaxy.org support gtn-tutorial , transcriptomics	5	489	October 16, 2024
reference genome for STARsolo usegalaxy.org support reference-index , custom-genome , transcriptomics , tool-help , rna_starsolo	3	98	December 4, 2024
How to get LogFC from Log2(FC) usegalaxy.eu support gtn-tutorial , transcriptomics	4	97	July 22, 2025
issues with sortmeNRA usegalaxy.org support transcriptomics , tool-help , bg_sortmerna	1	77	September 27, 2024
SortMeRNA not working following the Metatranscriptomic Workflow Tutorial usegalaxy.org support troubleshooting , transcriptomics , bg_sortmerna , humann	5	174	September 24, 2024
StringTie gene count files have different row numbers usegalaxy.eu support transcriptomics , tool-help , stringtie	12	242	July 22, 2025
Optimizing STAR Mapping for Large-Scale Genome Annotation: Managing Memory Overflows in RNA-Seq Workflows workflow , reference-index , galaxy-local , mapping , transcriptomics , exceeds-memory-error	6	117	September 10, 2024
Goseq NA NA NA NA values usegalaxy.org support troubleshooting , transcriptomics , goseq	13	191	September 8, 2024
Error running edgeR usegalaxy.org support transcriptomics , tool-help , edger	4	107	September 3, 2024
Error when running DeSeq2: help resources and input strategies Resources transcriptomics , resources , tool-help , deseq2	4	469	July 22, 2025
How to obtain FASTA sequence after mapping RNA-Seq file transcriptomics , reference-transcriptome	1	133	August 29, 2024
Problems Bowtie2 or Htseqcount usegalaxy.org support transcriptomics	1	89	August 27, 2024
How can i get RPKM for Single end data? transcriptomics , tool-help , rseqc_fpkm_count	1	64	August 24, 2024
Conversion from scRNA-seq files to bam files usegalaxy.org support transcriptomics	1	54	August 24, 2024
List with zero data sets in Limma voom usegalaxy.org support transcriptomics , tool-help , limma_voom	10	175	August 18, 2024
Help with TPM values usegalaxy.org support transcriptomics	2	192	August 15, 2024
About DESeq2 Errors Resources transcriptomics , resources , deseq2 , featurecounts	2	80	September 17, 2024
Genome index STAR transcriptomics , igv	1	93	August 13, 2024
Ajusting batches from different experiments in DESeq2 analysis transcriptomics , tool-help , deseq2	1	47	August 6, 2024
Calculating FPKM or RPKM directly from Counts transcriptomics	2	125	July 22, 2025
DESeq2 Analysis with tximport Output - Matrix Dimension Error transcriptomics , deseq2 , salmon	5	252	July 22, 2025
limma-voom multiple factors & groups usegalaxy.org support transcriptomics , limma_voom	5	675	July 25, 2024
Interpreting Reference/Primary Factor Group for DeSeq2 results usegalaxy.org support transcriptomics , deseq2	4	179	July 17, 2024
Genomes in columns for limma-voom. usegalaxy.org support transcriptomics	1	24	July 15, 2024
Funannotate fails, maybe trying to create a file usegalaxy.eu support transcriptomics , funannotate	3	172	July 10, 2024
multiple jobs stuck on queue in RNA STAR for almost 2 days usegalaxy.org support transcriptomics , queued-gray-datasets , rna_star	3	522	July 8, 2024
RNA STAR error in the log output file usegalaxy.org support transcriptomics	10	165	July 2, 2024
DEseq2 with 3 factor levels only output one contrast group usegalaxy.org support transcriptomics	1	127	June 28, 2024
Require Assistance with RNA-Seq Analysis Pipeline for Studying Differential Expression transcriptomics	1	194	June 21, 2024