# \#trinity\_abundance\_estimates\_to\_matrix

**URL:** https://help.galaxyproject.org/tag/trinity-abundance-estimates-to-matrix/657.md

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## [Build expression matrix (RSEM) troubleshooting](https://help.galaxyproject.org/t/build-expression-matrix-rsem-troubleshooting/15746)

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**Author:** [@saadlodhi0916](https://help.galaxyproject.org/u/saadlodhi0916)\
**Replies:** 1\
**Last updated:** [June 25, 2025, 5:08am UTC](https://help.galaxyproject.org/t/build-expression-matrix-rsem-troubleshooting/15746 "2025-06-25T05:08:01Z")

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Request to install the RSEM generate data matrix tool (IUC ToolShed ID: toolshed.g2.bx.psu.edu/repos/iuc/rsem/rsem\_generate\_data\_matrix) on usegalaxy.eu to enable end-to-end paired-end RNA-seq workflows. (admin edit) Hel…

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## [Build expression matrix for a de novo assembly of RNA-Seq data by Trinity](https://help.galaxyproject.org/t/build-expression-matrix-for-a-de-novo-assembly-of-rna-seq-data-by-trinity/12120)

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**Author:** [@bio\_code](https://help.galaxyproject.org/u/bio_code)\
**Replies:** 2\
**Last updated:** [April 9, 2024, 12:20pm UTC](https://help.galaxyproject.org/t/build-expression-matrix-for-a-de-novo-assembly-of-rna-seq-data-by-trinity/12120 "2024-04-09T12:20:15Z")

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Hi everyone!, After running “Align reads and estimate abundance on a de novo assembly of RNA-Seq data”, I’m trying to run “Build expression matrix for a de novo assembly of RNA-Seq data by Trinity”. One consideration is…