# \#trinotate

**URL:** https://help.galaxyproject.org/tag/trinotate/437.md

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## [Trinotate SQLite boilerplate unavailable on usegalaxy.eu?](https://help.galaxyproject.org/t/trinotate-sqlite-boilerplate-unavailable-on-usegalaxy-eu/15953)

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**Author:** [@mmnashrullah](https://help.galaxyproject.org/u/mmnashrullah)\
**Replies:** 4\
**Last updated:** [April 8, 2026, 2:13am UTC](https://help.galaxyproject.org/t/trinotate-sqlite-boilerplate-unavailable-on-usegalaxy-eu/15953 "2026-04-08T02:13:53Z")

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Hi All, I am trying Trinotate for my annotation. However, I found that the link https://data.broadinstitute.org/Trinity/\_\_deprecated\_trinotate\_resources/Trinotate\_v3\_RESOURCES/Trinotate\_v3.sqlite.gz is dead so we cannot…

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## [Deprecated tool: Trinonate. See GTN Transcriptomics tutorials for alternatives](https://help.galaxyproject.org/t/deprecated-tool-trinonate-see-gtn-transcriptomics-tutorials-for-alternatives/12392)

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**Author:** [@Ravita\_Tadiya](https://help.galaxyproject.org/u/Ravita_Tadiya)\
**Replies:** 2\
**Last updated:** [April 8, 2026, 2:04am UTC](https://help.galaxyproject.org/t/deprecated-tool-trinonate-see-gtn-transcriptomics-tutorials-for-alternatives/12392 "2026-04-08T02:04:22Z")

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Error, no gene\_id for trans: \[TRINITY\_DN76711\_c0\_g1\_i1\] at /mnt/tools/tool\_dependencies/\_conda/envs/mulled-v1-0534adab201f5820009b76442004c506252b49a190f1c3ca55d89fa4eb5bd895/bin/TrinotateSeqLoader.pl line 132, \<$fileha…

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## [On obtaining current eggNOG data](https://help.galaxyproject.org/t/on-obtaining-current-eggnog-data/16000)

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**Author:** [@mmnashrullah](https://help.galaxyproject.org/u/mmnashrullah)\
**Replies:** 1\
**Last updated:** [July 22, 2025, 7:38pm UTC](https://help.galaxyproject.org/t/on-obtaining-current-eggnog-data/16000 "2025-07-22T19:38:06Z")

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Hi All, After finally made it works, during the building of the Trinotate SQL Boilerplate, I found that one of the data sources is NOG annotations taken from eggNOG4.5. We know that current version of eggNOG is eggNOG …