Topics tagged troubleshooting

Topic	Replies	Views	Activity
Troubleshooting resources for errors or unexpected results share-or-publish , troubleshooting , queued-gray-datasets , resources How to troubleshoot your work in Galaxy, and how to ask for help! :mag_right: Review your Job Details → inputs + parameters + logs using the i-icon inside of any dataset. :mortar_board: Learn with a tutorial and custom…	5	10813	April 17, 2024
Issues with errors, data expiration, and account synchronization usegalaxy.org support troubleshooting	1	7	May 12, 2025
MOTHUR filter.seqs help troubleshooting , metagenomics , mothur	2	8	May 11, 2025
eggNOG has been running since 9 April troubleshooting , queued-gray-datasets	9	16	May 7, 2025
SNPEff eff job error usegalaxy.org support troubleshooting , snpeff	2	17	May 1, 2025
Editing a workflow to choose a different reference genome usegalaxy.org.au support gtn-tutorial , workflow , reference-index , troubleshooting	6	32	April 23, 2025
Maker and Braker 3 running for half a week - and still going usegalaxy.eu support troubleshooting , queued-gray-datasets	4	24	April 23, 2025
Forcefield.itp File not found during gromacs run despite uploading usegalaxy.eu support troubleshooting , gromacs	1	5	April 8, 2025
How to map a collection of individual samples against a custom reference genome with RNA STAR usegalaxy.eu support troubleshooting , igv	4	25	April 6, 2025
How to count BAM reads troubleshooting	1	18	April 3, 2025
Cannot "export history to file" usegalaxy.org support history-transfer , troubleshooting , server-open-issue	12	24	April 3, 2025
Loading sqlite database file onto RStudio usegalaxy.org support troubleshooting	1	6	April 1, 2025
QUAST ERROR. Can someone offer guidence? usegalaxy.org support troubleshooting , genome-annotation	12	46	March 31, 2025
Is Phageterm Still on Galaxy? troubleshooting	5	112	March 29, 2025
Deleted job still running usegalaxy.eu support troubleshooting	1	13	March 29, 2025
BBTools: BBNorm usegalaxy.eu support troubleshooting	2	15	March 28, 2025
limitGenomeGenerateRAM issue of RNA-STAR in my local galaxy galaxy-local , troubleshooting	1	21	March 21, 2025
the galaxy europe server is slow, jobs stuck troubleshooting	1	236	April 3, 2024
Allocation of server for teaching a class since the speed is low usegalaxy.org support troubleshooting , training	10	28	March 18, 2025
Gemini database installation crash server-admin , galaxy-local , troubleshooting , server-open-issue	6	23	March 17, 2025
Introductory Tutorial Genomics & Galaxy: Error on Overlapping Intervals usegalaxy.org support gtn-tutorial , troubleshooting	3	7	March 13, 2025
How to solve problems in edgeR? usegalaxy.eu support text-manipulation , troubleshooting , resources , tool-help , edger	2	33	March 13, 2025
Illumina fastq (pair-end) file conversion to fasta file usegalaxy.be support troubleshooting	2	30	March 7, 2025
Error Installing tusd via Ansible: HTTP Error 404 for v2.7.0 usegalaxy.eu support server-admin , galaxy-local , troubleshooting	3	30	March 6, 2025
goseq error in length and/or count files? usegalaxy.eu support troubleshooting	3	11	March 5, 2025
Datasets error and failure in DE analysis for mirna-seq troubleshooting , mirna	1	6	March 5, 2025
Faster Download and Extract Reads in FASTQ not working for 3 days troubleshooting , usegalaxyfr	1	8	March 3, 2025
Ensembl gene annotation gtf for rat problem with RNA STAR usegalaxy.org support troubleshooting , mapping , reference-annotation , reference-genome , resources	2	29	February 26, 2025
Workflow troubleshooting post release 24.2 troubleshooting , exceeds-memory-error	9	40	February 25, 2025
Data Upload: troubleshooting speed rates usegalaxy.org support upload , troubleshooting	11	97	February 24, 2025

Troubleshooting resources for errors or unexpected results

How to troubleshoot your work in Galaxy, and how to ask for help! :mag_right: Review your Job Details → inputs + parameters + logs using the i-icon inside of any dataset. :mortar_board: Learn with a tutorial and custom…