Topics tagged troubleshooting

Topic	Replies	Views	Activity
How to get faster help with your question Resources share-or-publish , troubleshooting , resources How to get faster help with your question We love details! :scientist: Consider Sharing your History or posting screenshots of your Job Information Details page. Questions with details attract the fastest replies! Pleas…	0	840	January 12, 2024
Troubleshooting resources for errors or unexpected results Resources share-or-publish , troubleshooting , queued-gray-datasets , resources , usegalaxy-fr How to troubleshoot your work in Galaxy, and how to ask for help! :mag_right: Review your Job Details → inputs + parameters + logs using the i-icon inside of any dataset. :mortar_board: Learn with a tutorial and custom…	0	11053	November 28, 2018
This is the legacy workflow run form. One or more tools in this workflow have required inputs that are not connected to other steps. The simplified form cannot handle disconnected runtime inputs usegalaxy.org support workflow , troubleshooting	1	7	September 22, 2025
DRAM distill: Error while running usegalaxy.eu support troubleshooting , metagenomics , tool-help	5	28	September 22, 2025
FROGSFUNC_1_placeseqs_and_copynumbers error troubleshooting , usegalaxy-fr	1	3	September 22, 2025
Galaxy Job Execution Error with SLURM Setup galaxy-local , troubleshooting	5	34	September 21, 2025
Issue with extracting datasets from unzipped files containing .gitkeep files usegalaxy.eu support troubleshooting , tool-help	4	5	September 19, 2025
Error on HISAT2 troubleshooting	5	15	September 17, 2025
Qiime2, taxonomy, filtering usegalaxy.eu support troubleshooting	2	34	September 11, 2025
Trinity job failed usegalaxy.org support troubleshooting	1	12	September 2, 2025
Multiple Sequence Alignment is not interactive usegalaxy.eu support troubleshooting , server-open-issue , visualization	2	18	September 2, 2025
Where to discuss / file corrections to documents troubleshooting	1	7	August 29, 2025
FROGS analysis and Phyloseq troubleshooting , usegalaxy-fr	2	193	August 29, 2025
Panaroo error - missing dependancies? usegalaxy.org.au support troubleshooting	7	20	August 28, 2025
Running MiRDeep2 with pooled reads from MiRDeep2 Mapper troubleshooting , mapping , mirna , rbc_mirdeep2	4	17	August 28, 2025
Maker genome annotation pipeline (Galaxy Version 2.31.11+galaxy2) running for weeks usegalaxy.eu support troubleshooting , queued-gray-datasets , genome-annotation	5	14	August 28, 2025
iPHoP job running for 6+ days on Galaxy Europe (880 genomes) usegalaxy.eu support troubleshooting , queued-gray-datasets	3	19	August 26, 2025
Random empty output files galaxy-local , troubleshooting	7	48	August 26, 2025
Asking for unmapped genes in RNA sequencing via Galaxy troubleshooting , mapping , transcriptomics , resources , rna_star	1	9	August 25, 2025
MaAsLin2 job fails due to glmmTMB / TMB version mismatch Resources troubleshooting , tool-help , maaslin2	2	6	August 21, 2025
msConvert can't proceed due to wine64: command not found usegalaxy.eu support troubleshooting	7	36	August 13, 2025
Difficulty in using OrthoFinder troubleshooting , evolution	26	326	August 11, 2025
Screening assembled genomes for contamination using NCBI FCS workflow not working troubleshooting , ncbi_fcs_gx	5	29	August 7, 2025
Filter sequences by ID in the tutorial Understanding Barcodes is not work troubleshooting	1	3	August 5, 2025
PyCaret Model Comparison usegalaxy.org support troubleshooting	1	9	August 5, 2025
Current issue in running my sequencing files usegalaxy.org support troubleshooting	1	17	August 5, 2025
Tsv file upload fail for maaslin2 usegalaxy.eu support upload , text-manipulation , troubleshooting	1	5	August 5, 2025
Help Needed: coverM Tool Fails with "mkdir: cannot create directory ‘single/’: File exists" Error usegalaxy.eu support troubleshooting , coverm_genome , coverm_contig	1	13	August 5, 2025
Getting information from database usegalaxy.eu support troubleshooting	1	10	August 5, 2025
MAKER on galaxy runs out of local space usegalaxy.org support troubleshooting , maker	1	11	July 25, 2025

How to get faster help with your question

share-or-publish , troubleshooting , resources

How to get faster help with your question We love details! :scientist: Consider Sharing your History or posting screenshots of your Job Information Details page. Questions with details attract the fastest replies! Pleas…

0

840

January 12, 2024

Troubleshooting resources for errors or unexpected results

Resources

share-or-publish , troubleshooting , queued-gray-datasets , resources , usegalaxy-fr

How to troubleshoot your work in Galaxy, and how to ask for help! :mag_right: Review your Job Details → inputs + parameters + logs using the i-icon inside of any dataset. :mortar_board: Learn with a tutorial and custom…

0

11053

November 28, 2018

This is the legacy workflow run form. One or more tools in this workflow have required inputs that are not connected to other steps. The simplified form cannot handle disconnected runtime inputs

usegalaxy.org support

workflow , troubleshooting