Topics tagged troubleshooting

Topic	Replies	Views	Activity
Troubleshooting resources for errors or unexpected results share-or-publish , troubleshooting , queued-gray-datasets , resources Troubleshooting How to review your work in Galaxy, and how to ask for help! :mag_right: Review the full Dataset Details of your job, including inputs, parameters and logs in summary format directly in the application us…	5	9407	April 17, 2024
Issue with StringTie Output File (Fatal Error: Exit Code 1) troubleshooting	0	8	April 27, 2024
No link for UCSC to visualise datasets database , troubleshooting , ucsc	20	97	April 26, 2024
Working on mapping, troubleshooting	3	22	April 26, 2024
Porechop tool not working usegalaxy.eu support troubleshooting	1	17	April 26, 2024
RPStblastn subject defline(s) usegalaxy.org support troubleshooting , blast	1	11	April 26, 2024
RESOLVED April 17 2024: Maintenance event at UseGalaxy.org (No destinations are available to fulfill request) usegalaxy.org support troubleshooting	17	258	April 25, 2024
Filter with SortMeRNA option for generating statistics file missing usegalaxy.org support troubleshooting , tool-help , bg_sortmerna	3	25	April 25, 2024
ChIP-seq-mapper-results-wrong troubleshooting , usegalaxy-cz	5	53	April 25, 2024
bedtools doesn't work since Maintenance usegalaxy.eu support workflow , troubleshooting	1	19	April 24, 2024
bbtools:bbduk memory issue troubleshooting	3	29	April 24, 2024
Error with Rstudio - crashed and impossible to run again usegalaxy.eu support troubleshooting , rstudio	1	40	April 23, 2024
Trycycler cluster showing error troubleshooting	1	22	April 22, 2024
Issues with Qualimap BamQC Tool: Fatal Error Exit Code 1 and Input Mapping File Not Found usegalaxy.org support galaxy-local , troubleshooting	1	47	April 17, 2024
CustomProDB troubleshooting troubleshooting , genome-annotation , tool-help , custom_pro_db	3	67	April 17, 2024
quality string - read length problems in Cutadapt output usegalaxy.eu support troubleshooting , quality-control	1	47	April 11, 2024
Metadata generation failed usegalaxy.org support troubleshooting	1	91	April 9, 2024
Extract rDNA reads from sequencing reads usegalaxy.org support fasta-manipulation , troubleshooting , bwa_mem2	3	64	April 9, 2024
Is Samtools Faidx Available on Galaxy US? usegalaxy.org support troubleshooting	4	74	April 9, 2024
AnnotatemyID warning and warning reappears as fatal error during limma DE usegalaxy.org support troubleshooting , transcriptomics	2	50	April 9, 2024
rnaseq count files not being recognized by Limma, deseq2, edgeR usegalaxy.org support troubleshooting , transcriptomics	1	102	April 8, 2024
I cannot make JBrowse work in Galaxy troubleshooting	1	38	April 8, 2024
Issues with FASTA fetch on local galaxy instance usegalaxy.org support troubleshooting	7	57	April 8, 2024
Mate-Pair Reads usegalaxy.org support troubleshooting	1	53	April 4, 2024
the galaxy europe server is slow, jobs stuck troubleshooting	1	72	April 3, 2024
Trycycler standard error troubleshooting , metagenomics	2	48	April 3, 2024
Can't identify the error in Funannotate usegalaxy.eu support troubleshooting	2	65	April 1, 2024
bedtools BAM to BED usegalaxy.eu support troubleshooting	1	70	March 29, 2024
Interactive Blobtoolkit link not working usegalaxy.org support troubleshooting , interactive-tools	1	82	March 26, 2024
How to find SAM/BAM to count matrix in Galaxy usegalaxy.org support troubleshooting	6	87	March 26, 2024

Troubleshooting resources for errors or unexpected results

Troubleshooting How to review your work in Galaxy, and how to ask for help! :mag_right: Review the full Dataset Details of your job, including inputs, parameters and logs in summary format directly in the application us…