Topics tagged troubleshooting

Topic	Replies	Views	Activity
Troubleshooting resources for errors or unexpected results share-or-publish , troubleshooting , queued-gray-datasets , resources How to troubleshoot your work in Galaxy, and how to ask for help! :mag_right: Review your Job Details → inputs + parameters + logs using the i-icon inside of any dataset. :mortar_board: Learn with a tutorial and custom…	5	10722	April 17, 2024
How to map a collection of individual samples against a custom reference genome with RNA STAR usegalaxy.eu support troubleshooting , tool-help	0	4	March 26, 2025
QUAST ERROR. Can someone offer guidence? usegalaxy.org support troubleshooting , genome-annotation	11	37	March 25, 2025
limitGenomeGenerateRAM issue of RNA-STAR in my local galaxy galaxy-local , troubleshooting	1	8	March 21, 2025
the galaxy europe server is slow, jobs stuck troubleshooting	1	226	April 3, 2024
Allocation of server for teaching a class since the speed is low usegalaxy.org support troubleshooting , training	10	21	March 18, 2025
Gemini database installation crash server-admin , galaxy-local , troubleshooting , server-open-issue	6	15	March 17, 2025
Introductory Tutorial Genomics & Galaxy: Error on Overlapping Intervals usegalaxy.org support gtn-tutorial , troubleshooting	3	6	March 13, 2025
How to solve problems in edgeR? usegalaxy.eu support text-manipulation , troubleshooting , resources , tool-help , edger	2	22	March 13, 2025
Illumina fastq (pair-end) file conversion to fasta file usegalaxy.be support troubleshooting	2	23	March 7, 2025
Error Installing tusd via Ansible: HTTP Error 404 for v2.7.0 usegalaxy.eu support server-admin , galaxy-local , troubleshooting	3	24	March 6, 2025
goseq error in length and/or count files? usegalaxy.eu support troubleshooting	3	11	March 5, 2025
Datasets error and failure in DE analysis for mirna-seq troubleshooting , mirna	1	6	March 5, 2025
Faster Download and Extract Reads in FASTQ not working for 3 days troubleshooting , usegalaxyfr	1	6	March 3, 2025
Ensembl gene annotation gtf for rat problem with RNA STAR usegalaxy.org support troubleshooting , mapping , reference-annotation , reference-genome , resources	2	19	February 26, 2025
Workflow troubleshooting post release 24.2 troubleshooting , exceeds-memory-error	9	39	February 25, 2025
Data Upload: troubleshooting speed rates usegalaxy.org support upload , troubleshooting	11	76	February 24, 2025
ModuleNotFoundError: No module named 'sqlalchemy' server-admin , galaxy-local , troubleshooting	2	31	February 21, 2025
How should I prepare the correct input file to run CEMiTool without bug? usegalaxy.org support troubleshooting , tool-help , cemitool	1	8	February 19, 2025
"PPanGGOLiN all" error in https://usegalaxy.eu usegalaxy.eu support troubleshooting , ppanggolin_all	5	27	February 16, 2025
Minimap2 Memory Issue with hg38/T2T on Galaxy usegalaxy.org support troubleshooting , exceeds-memory-error	1	8	February 14, 2025
Is there a way to edit all headers in a BAM file? troubleshooting , featurecounts	3	23	February 14, 2025
Trouble using seqtk_trimfq usegalaxy.eu support workflow , troubleshooting , fastq_manipulation	7	23	February 13, 2025
Troubleshooting CustomProDB troubleshooting	2	9	February 11, 2025
Help me with an error with uploading my dataset upload , troubleshooting	1	9	February 11, 2025
FLAIR app returning 0 lines of output usegalaxy.eu support troubleshooting	1	9	February 11, 2025
FEELnc troubleshooting troubleshooting , reference-annotation , lncrna	5	159	February 10, 2025
Cant access tools usegalaxy.eu support troubleshooting	4	33	February 10, 2025
Difficulty in using OrthoFinder troubleshooting , evolution	14	115	February 1, 2025
LEfSe - Cladogram missing legend troubleshooting	2	32	January 21, 2025

Troubleshooting resources for errors or unexpected results

How to troubleshoot your work in Galaxy, and how to ask for help! :mag_right: Review your Job Details → inputs + parameters + logs using the i-icon inside of any dataset. :mortar_board: Learn with a tutorial and custom…