variant

Topic Replies Activity
SNP variant analysis 1 January 31, 2020
download gnomad vcf.bgz.tbi dataset into galaxy 10 January 29, 2020
merge multiple VCF files - variant analysis and sample organization 6 January 29, 2020
SnpEff annotation- transcript information discordant to the information available on the Ensemble website 12 January 29, 2020
download gnomad vcf.bgz.tbi dataset into galaxy for gemini annotate and/or join functions 3 January 23, 2020
Galaxy Tool Wrappers for GATK 4? 2 January 13, 2020
Downsampling all regions to specified maximum number of reads 5 January 13, 2020
How do I count the number of variants per gene from an annotated vcf file? 6 January 7, 2020
ANNOVAR annotation error 2 January 1, 2020
Use Galaxy to find SNPs between two yeast genome fastq data 3 December 22, 2019
How to filter rare variants (10%) out 5 September 18, 2019
Can I assemble 1 chromosome only with RNA-Star -- Custom Genome, Variant calling, RNA-seq 3 September 4, 2019
BCFtools Mpileup Qual=0 7 August 20, 2019
SNpEff build Java error 3 August 8, 2019
Calculating variant allele frequency from FreeBayes VCF 4 July 4, 2019
Generating consensus sequence from bam file re: Variant analysis 2 June 20, 2019
Pileup to consensus sequence aligned to reference - Please help 3 May 10, 2019
Help With Choice of Nanopore Sequence Data Analysis Tools 1 May 5, 2019
Creating gVCF file by using Galaxy 1 March 19, 2019
When does in-file metadata matter, and what tools on galaxy can help me do so? 8 March 15, 2019
From FastQ to fasta - WGS Variant Analysis 3 February 14, 2019
Pruning big files - Filtering SNPs 2 February 5, 2019
Regarding Understanding Quality of Mutation 3 December 19, 2018
Change pileup to vcf format allowing for great depth (100.000 reads)??? 2 December 6, 2018
Mpileup with vcf output? How to change galaxy to older version? 4 December 6, 2018