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Building an indexed genome file for GATK tools
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13
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385
|
October 27, 2021
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Annotation and variant calling on diploid systems
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3
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132
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September 1, 2021
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iVar variants - Enhancement request: Include optional GFF3 reference annotation
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4
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131
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August 11, 2021
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Phasing SNPs in pedigrees (mini linkage)
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7
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177
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June 28, 2021
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Importing dbNSFP database
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2
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154
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May 13, 2021
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How to calculate allelic imbalance in usegalaxy
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2
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144
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March 17, 2021
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GATK4 baserecalibrator
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4
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234
|
March 17, 2021
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Error in Naive Variant Caller (NVC) in usegalaxy.org -- Resolved
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7
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209
|
February 15, 2021
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MiModd variant calling
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1
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128
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February 15, 2021
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how to solve the error of variant annotator usegalaxy
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0
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97
|
February 12, 2021
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Compare variants between RNA-seq libraries
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1
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156
|
February 2, 2021
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Deep learning based software tools for variant calling, alignment, assembly on Galaxy instances
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0
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154
|
January 25, 2021
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How to bring the reference genome to Usegalaxy
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3
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185
|
December 14, 2020
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Does samtools have a read limit?
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10
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244
|
October 26, 2020
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Downsampling all regions to specified maximum number of reads
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6
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647
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October 23, 2020
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How do I count the number of variants per gene from an annotated vcf file?
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6
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1293
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August 28, 2020
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hg38 for Gemini vcf database?
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1
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405
|
August 13, 2020
|
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SNpEff build Java error
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6
|
665
|
August 11, 2020
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Project help...(variant analysis)
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1
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1435
|
August 3, 2020
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Merging VCF files
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1
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208
|
July 26, 2020
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identify mutations in RNAseq data
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1
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256
|
June 17, 2020
|
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BAM file analysis -- Variant analysis tutorials
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1
|
290
|
May 21, 2020
|
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Troubleshooting error from tool gatk4_mutect2 version 4.1.4.0+galaxy2
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1
|
414
|
May 11, 2020
|
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i got this error when i wanted to Evaluate the depth of coverage of the aligned region -- ALL GATK 1.4 tools are deprecated and should be avoided.
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5
|
366
|
April 23, 2020
|
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Can not find the MimodD tool in Galaxy
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4
|
218
|
April 14, 2020
|
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Annotate VCF with gene names
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3
|
1608
|
March 12, 2020
|
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SNP variant analysis
|
|
0
|
224
|
January 31, 2020
|
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download gnomad vcf.bgz.tbi dataset into galaxy
|
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9
|
845
|
January 29, 2020
|
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merge multiple VCF files - variant analysis and sample organization
|
|
5
|
3652
|
January 29, 2020
|
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SnpEff annotation- transcript information discordant to the information available on the Ensemble website
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11
|
2071
|
January 29, 2020
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